RNA id: TU126539


Basic Information

Item Value
RNA id TU126539
length 292
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G110981
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 8421960 ~ 8422251 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggcaggcaagcaggcaggcaggcagacagatagccagacagacagaaacatagtcagacagacagatagacagtcagacagacacaggcagacaaacagaaacaggcagacagacagacacacaggcagaaagacagatagacACATAGGCAGACAGActtatagacagtcagacagacagacacacacacacacacacagacagacacagtggcagaaagacagatagacacataggcagacagacagtcatacagtacagtatggaccTCACCACCGGGGCAACATCGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126488 lncRNA upstream 42639 8377245 ~ 8379321 (+) True G110936
TU126453 lncRNA upstream 77489 8344188 ~ 8344471 (+) True G110904
TU126449 lncRNA upstream 81839 8339911 ~ 8340121 (+) True G110900
TU126206 lncRNA upstream 92731 8284310 ~ 8329229 (+) True G110717
TU126258 lncRNA upstream 147523 8273991 ~ 8274437 (+) True G110751
TU126555 lncRNA downstream 41751 8464002 ~ 8466672 (+) True G110991
TU126559 lncRNA downstream 44579 8466830 ~ 8467029 (+) True G110994
TU126587 lncRNA downstream 99789 8522040 ~ 8522763 (+) True G111015
TU126653 lncRNA downstream 119365 8541616 ~ 8541876 (+) True G111067
TU126657 lncRNA downstream 126304 8548555 ~ 8548896 (+) True G111071
XM_036937110.1 mRNA upstream 94230 8265710 ~ 8327730 (+) False LOC110514591
XM_036937049.1 mRNA downstream 58265 8480516 ~ 8505603 (+) False LOC118936502
XM_036937053.1 mRNA downstream 58265 8480516 ~ 8505603 (+) False LOC118936502
XM_036937056.1 mRNA downstream 58265 8480516 ~ 8505603 (+) False LOC118936502
XM_036937063.1 mRNA downstream 58265 8480516 ~ 8505603 (+) True LOC118936502
XR_005034903.1 mRNA downstream 205520 8627771 ~ 8645961 (+) True LOC118937640
TU126159 other upstream 318040 8073366 ~ 8103920 (+) True G110674
TU126124 other upstream 486823 7898596 ~ 7935137 (+) True G110644
TU125754 other upstream 715471 7701982 ~ 7706489 (+) True creb5b
TU125753 other upstream 725718 7615959 ~ 7696242 (+) False creb5b
TU125259 other upstream 1117315 7303028 ~ 7304645 (+) True pde11al
TU126891 other downstream 614553 9036804 ~ 9037901 (+) False LOC110518388
TU127103 other downstream 799234 9221485 ~ 9229025 (+) True LOC110535224
TU127136 other downstream 908018 9330269 ~ 9331616 (+) False G111453
TU127140 other downstream 908018 9330269 ~ 9331616 (+) False G111453
TU127143 other downstream 908018 9330269 ~ 9331616 (+) False G111453

Expression Profile