RNA id: TU126555


Basic Information

Item Value
RNA id TU126555
length 1046
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G110991
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 8464002 ~ 8466672 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAAAACTAAATGCACTGAAAAAGGTTTCAGTGTATGGGCTTAAGACACGGAGTTAAAAAAATAGCAATCTGAATACTGAGGATTGGATTTGGCAGAAAAAACAAATGTAATCCCTTCCAACCTTAACTAAAATTAGCGTAAATACAGCTAAAATAAACGTAAATAAATGTAATGAAAAACCAGGGGGATTTAATGTAACATTGTAACATAAAATATAAAAGGTATGAAACCGTGTGACAACTGGAACTGGAAGTAACTCTACTGTATGTTGCCTCACTATTAATGTCAAATCAATAACAAGCGCTATCACATAGTGTCTAACAGAAAAACCCAAAGTAACAGACCTCAATATAGTTTCTGCTGTTTGGTCTTAAGAAATGATGTCAAAGGAAGCAGATATCTGTTAGACAAATTATCAAAACAAAACCTTTATAAAACTCATGTAAAGATACATATGGTTAATATGgctgagatatgttcgtTTGCATCCTGTGTAACAGAATCTGTCCATACACTGGTTCTGGCTTTGTATGAACAACATCTAGCAATATAGTTTAAGTATCTAGCCCCAATTAATAATTAAATATAGCTATAATTATGTTTACGACATGAAGTGAACTCTAAGAAGAAACTCTGACAAAGTGGGCAAAGACACGACACAATACAAGAACAAGAACAAACATTGACTTCATCTTCGCCTCCCCCTCTGCATCGTAACAAGGACCTCCATATTCAAAGACAGTGGGAACTGCAGTAAGCTTGATCAAAGGGCCTCTGTGGCCTCAGTTCTACAGTTGTTACCCATTTGAGCTCTCCAGCATGCTCATTCTTCTCCTCAGTGGGGttctatggtttggggaaggctgAGACCCTGAGGATCTCCAGACAGTTGACTGCGATTAGCGCCCCGGTCAGCTGCCTCCACTGTCTGGTGATTGGGCTCTTCATCTTGTCTAGGGCCAGGTGGAGGTCCTGGATCATGTCCTGGTAGCCCTCCCCGTACAACTGGCTCCATGAGTACAGGAAGTCATAGGCAGGTTTCCAC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126539 lncRNA upstream 41751 8421960 ~ 8422251 (+) True G110981
TU126488 lncRNA upstream 84681 8377245 ~ 8379321 (+) True G110936
TU126453 lncRNA upstream 119531 8344188 ~ 8344471 (+) True G110904
TU126449 lncRNA upstream 123881 8339911 ~ 8340121 (+) True G110900
TU126206 lncRNA upstream 134773 8284310 ~ 8329229 (+) True G110717
TU126559 lncRNA downstream 158 8466830 ~ 8467029 (+) True G110994
TU126587 lncRNA downstream 55368 8522040 ~ 8522763 (+) True G111015
TU126653 lncRNA downstream 74944 8541616 ~ 8541876 (+) True G111067
TU126657 lncRNA downstream 81883 8548555 ~ 8548896 (+) True G111071
TU126782 lncRNA downstream 182067 8648739 ~ 8648943 (+) True G111165
XM_036937110.1 mRNA upstream 136272 8265710 ~ 8327730 (+) False LOC110514591
XM_036937049.1 mRNA downstream 13844 8480516 ~ 8505603 (+) False LOC118936502
XM_036937053.1 mRNA downstream 13844 8480516 ~ 8505603 (+) False LOC118936502
XM_036937056.1 mRNA downstream 13844 8480516 ~ 8505603 (+) False LOC118936502
XM_036937063.1 mRNA downstream 13844 8480516 ~ 8505603 (+) True LOC118936502
XR_005034903.1 mRNA downstream 161099 8627771 ~ 8645961 (+) True LOC118937640
TU126159 other upstream 360082 8073366 ~ 8103920 (+) True G110674
TU126124 other upstream 528865 7898596 ~ 7935137 (+) True G110644
TU125754 other upstream 757513 7701982 ~ 7706489 (+) True creb5b
TU125753 other upstream 767760 7615959 ~ 7696242 (+) False creb5b
TU125259 other upstream 1159357 7303028 ~ 7304645 (+) True pde11al
TU126891 other downstream 570132 9036804 ~ 9037901 (+) False LOC110518388
TU127103 other downstream 754813 9221485 ~ 9229025 (+) True LOC110535224
TU127136 other downstream 863597 9330269 ~ 9331616 (+) False G111453
TU127140 other downstream 863597 9330269 ~ 9331616 (+) False G111453
TU127143 other downstream 863597 9330269 ~ 9331616 (+) False G111453

Expression Profile