RNA id: TU126631


Basic Information

Item Value
RNA id TU126631
length 2596
lncRNA type antisense_over
GC content 0.46
exon number 7
gene id G111047
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 8500104 ~ 8505604 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGGATGTAATGTTTTATTTGAATGCATATTTACAAACAAGTAACAGCCTTACATAGTGTACTCATTTAAATATATAGATATTCTTCAAATGCATACTTTGCCTTTTAGAGCATAAAGAGTATAGAGCATAGAGAGTGTCCCTgtttaaaataatacaaatatcaCAGTATACAATAACATACAACAGTCTTCTGAACATCAACCTCTCATATTTACAAGTATACAACCTTTCCCAGTCACTGCTTTTATCCAGTCATTTAACTGTGATAATGTGTCTTTCTGTTTTTCTTATAGAAATACATACTGTACCTGTTGTCTTCAGACAATGAAAGGTGCCATGGTCAAGAACAGTTCATTCATTCGAGGCAGCTTATCAAAACTTATTTGTGCTGATGTCCGTGCTCCAGCATTACTGCTAAAGTGAGTAATACAGTGAGTAACCAATAGCACAGTAACCCAATAGGCTACATTTCAGTGCACCACCTACATGTGATCAAACCAATTGACACTGAGACAGTTTGTATCATGCAATTGAACATCATTTTAGCAGTCCGTTCAAAGTGAGTTATGGCTGCCATATCATCGTCCATATAGATTCCTTATTCtttatacatttttataaataaccttcatttaaccaggaagTCCCATTATGGACAGGAGACCTCTTTCTCAAGGGGGACCTGGCTAAGAAGTGCAGCTCAATAAAAAGAGCTCACAAAACAACATTCAACAGAACAGTACATACGCTGCAAAACATCAATCTGAATATGAGTTAGTGGTTGACCTGTGCGTTGACCAGGGCATAGTAAGCCCCCCCTTTAGCCATGAGGTCAGTATGTGTACCCTGCTCTGTCACCTGACCATACTGAATTACCGCTATCTGGTCTGCGTTCTGGATGGTAGACAGGCGGTGGGCGATCACGATGCAGGTGCGGCCCTGCCGGGCGGCGTCTAAAGCATGTTGGACaatcttctcactctctgtgtcCAGGGCGGAAGTGGCTTCATCCAGCAGCAGTACTTTAGGCTGCCTGACCAGTGCTCTGGCGATGGCTATCCTCTGTTTCTGACCTCCAGACATCTGGGTCCCCTTGTCCCCAACCCTGGTATTGTATTtCTCTGGCAGGCCCATGATGAAGTCATGGATGTTGGCGTTCTTGGCTGCCTCCTCTATCTCATCCTGAGAGACCTCTCTGCTGTTGTCCCCATACTGGATGTTCTCTGAGATGCTGCAGTCGAACAGGATGGGCTCCTGGGACACCAGGCCCAGCTGAGACCTCAGCCACGACAGGTTCAGGGTCTTAGTATCCAACCCATCCACTAACACTTGTCCTTCAGCAGGGCTATAGAAGCGCTCCAGTAGTTGTATGGAGGTGCTTTTACCACAGCCACTCTCCCCGACCAGGGCCAGGGTCTGACCAGGCCCCACTGACACGTTCAACCCCTGGAGAACCCTCACGTTCTGACGGGTCGGGTACGCAAAGTGGATCCCTCGGAACTCAATGTCCCCGACAAAGTCCGTTggcttctctccctcctcactgTAAATGTCAATCTCTGGTTTCTTCTCCAACAAGCCAAGAATTCTCCCCGCAGCTGCTTTCGCTTTGGCAAAGTCAGGAGCAAAAGATGCTGATTCTCCTATGTTCATGGCAGCAAATATGATCACAGAAAACACACTGCGAAAGAAAAGGACAATGTTGTACTATCACTGCCACTATATCGGCAGACCCTGGTCATGACCCAACTCAACGAGGCTGTCTCAGGGAGatttgggatatgcaaaaaacacacatgTGCATTAATacacatgtgtgaaataggacaaatataagcacccaccaaattaatgttataattatattattactataattTTTATGTTACCGTGTAGTGACAATGTGGCAGCCAAGGGTTCTAGTCAGGGTTGGGGTACATTCCATTTCAATTGCAATCAATTCAAAACCCAATTCCAACAGCACATTTTCCTCAATGAAAAGCTTTGAAGACAActggaattggaatttcagtgtacttcctgaattgactggaatgtaAATGGAATGTACCCCAACCCTGGTGTGAATGTATTCATTTGAGATATAACAGTACCAGAATGTATACTCACAGGAAAACATTTTCATATTCTGTGTGACAGTGAGCAATAAGCCAGGACCCGAAGCGGAAGATTGCAGCATTGACCATGTAAGGGATTGCTTGGGCAACGGCAAATGTTAGTCCGTAGATGGGAGCCTTCACCAAACCGTTCTGGTATGGTCTTTCTAGACTGTCCATGAACTTGTGAAAGAAGACGTCCTCCCGTGTCAATCCAACAACTGTCTTGAAGTTTTCAACGGTCTCTGTAGATATCTTCCCAGACTGCTCCAGGGCACCCTGGTCTTTGGAGGCGTGGCCTGCCATTGCCCTCATCTGAATGAAGTTGGCTCCAATGAGGAAGGGCACACAGGCGAGGATGAGGAGGGTGAGCTGCCAGCTGTGGATAAAGGCCACCACAATGGCGATGGTGAGAGCACAGACTGTGTTGGTGGCCAGACCCAACCTAGACCCAGTCGCCtggtggtgaggagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126593 lncRNA downstream 78420 8420930 ~ 8421684 (-) True G111017
TU126517 lncRNA downstream 102994 8396762 ~ 8397110 (-) True G110962
TU126487 lncRNA downstream 123069 8376644 ~ 8377035 (-) True G110935
TU126477 lncRNA downstream 138794 8360900 ~ 8361310 (-) True G110928
TU126459 lncRNA downstream 152059 8347539 ~ 8348045 (-) True G110910
TU126641 lncRNA upstream 17719 8523323 ~ 8523546 (-) True G111055
TU126724 lncRNA upstream 96317 8601921 ~ 8602255 (-) True G111111
TU126750 lncRNA upstream 96721 8602325 ~ 8639765 (-) True G111135
TU126759 lncRNA upstream 107359 8612963 ~ 8624946 (-) True G111143
TU126761 lncRNA upstream 108576 8614180 ~ 8615636 (-) True G111144
XM_021586345.2 mRNA downstream 28582 8466107 ~ 8471522 (-) True LOC118936301
XM_021586355.2 mRNA downstream 28583 8466107 ~ 8471521 (-) False LOC118936301
XM_036937096.1 mRNA downstream 28892 8466107 ~ 8471212 (-) False LOC118936301
XM_036937149.1 mRNA downstream 70784 8424288 ~ 8429320 (-) False LOC118937639
XM_021586325.2 mRNA downstream 104628 8393785 ~ 8395476 (-) False LOC100136714
XM_036937129.1 mRNA upstream 1975 8507579 ~ 8510893 (-) False LOC110506629
XM_036937138.1 mRNA upstream 1975 8507579 ~ 8510920 (-) False LOC110506629
XM_036937134.1 mRNA upstream 1975 8507579 ~ 8513361 (-) True LOC110506629
XM_036937168.1 mRNA upstream 187532 8693136 ~ 8736940 (-) False LOC110535184
XM_036937174.1 mRNA upstream 187532 8693136 ~ 8752164 (-) False LOC110535184
TU126590 other downstream 74092 8423811 ~ 8426012 (-) True LOC118937639
TU126444 other downstream 174424 8324960 ~ 8325680 (-) False G110896
TU126445 other downstream 174424 8324960 ~ 8325680 (-) True G110896
TU126328 other downstream 376435 8104064 ~ 8123669 (-) False LOC110516569
TU126324 other downstream 376548 8097895 ~ 8123556 (-) False LOC110516569
TU126623 other upstream 16398 8522002 ~ 8522709 (-) False G111044
TU126626 other upstream 16398 8522002 ~ 8522761 (-) True G111044
TU127197 other upstream 199700 8705304 ~ 8736398 (-) True LOC110535184
TU127230 other upstream 265932 8771536 ~ 8772820 (-) True LOC110519098
TU127371 other upstream 544685 9050289 ~ 9050798 (-) True G111650

Expression Profile