RNA id: TU126653


Basic Information

Item Value
RNA id TU126653
length 261
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G111067
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 8541616 ~ 8541876 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actgaaatgtttattctgcatttaacccaacccctctgaatcagagagttgcggggggctgccttaatcaacatccacgtcttcagcgcccggggaacagtgggttaactgccttgctcaggggcagaacgacagattgttaaccttgtcagctcggggattcgacccagcaaccttccggctactggcccaacgctatGACTTGgctgactggagtctgacaattatTTGACCCTACCTCTGACATGccaagtatatagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126587 lncRNA upstream 18853 8522040 ~ 8522763 (+) True G111015
TU126559 lncRNA upstream 74587 8466830 ~ 8467029 (+) True G110994
TU126555 lncRNA upstream 74944 8464002 ~ 8466672 (+) True G110991
TU126539 lncRNA upstream 119365 8421960 ~ 8422251 (+) True G110981
TU126488 lncRNA upstream 162295 8377245 ~ 8379321 (+) True G110936
TU126657 lncRNA downstream 6679 8548555 ~ 8548896 (+) True G111071
TU126782 lncRNA downstream 106863 8648739 ~ 8648943 (+) True G111165
TU126795 lncRNA downstream 124718 8666594 ~ 8667216 (+) True G111178
TU126812 lncRNA downstream 171605 8713481 ~ 8714511 (+) True G111195
TU126823 lncRNA downstream 187423 8729299 ~ 8732801 (+) True G111204
XM_036937049.1 mRNA upstream 36013 8480516 ~ 8505603 (+) False LOC118936502
XM_036937053.1 mRNA upstream 36013 8480516 ~ 8505603 (+) False LOC118936502
XM_036937056.1 mRNA upstream 36013 8480516 ~ 8505603 (+) False LOC118936502
XM_036937063.1 mRNA upstream 36013 8480516 ~ 8505603 (+) True LOC118936502
XM_036937116.1 mRNA upstream 213886 8267427 ~ 8327730 (+) True LOC110514591
XR_005034903.1 mRNA downstream 85895 8627771 ~ 8645961 (+) True LOC118937640
XM_036937193.1 mRNA downstream 278483 8820359 ~ 9072449 (+) False LOC110518388
XM_036937201.1 mRNA downstream 278484 8820360 ~ 9072449 (+) False LOC110518388
XM_036937197.1 mRNA downstream 278485 8820361 ~ 9072449 (+) False LOC110518388
XM_036937203.1 mRNA downstream 278485 8820361 ~ 9072449 (+) False LOC110518388
TU126159 other upstream 437696 8073366 ~ 8103920 (+) True G110674
TU126124 other upstream 606479 7898596 ~ 7935137 (+) True G110644
TU125754 other upstream 835127 7701982 ~ 7706489 (+) True creb5b
TU125753 other upstream 845374 7615959 ~ 7696242 (+) False creb5b
TU125259 other upstream 1236971 7303028 ~ 7304645 (+) True pde11al
TU126891 other downstream 494928 9036804 ~ 9037901 (+) False LOC110518388
TU127103 other downstream 679609 9221485 ~ 9229025 (+) True LOC110535224
TU127136 other downstream 788393 9330269 ~ 9331616 (+) False G111453
TU127140 other downstream 788393 9330269 ~ 9331616 (+) False G111453
TU127143 other downstream 788393 9330269 ~ 9331616 (+) False G111453

Expression Profile