RNA id: TU126657


Basic Information

Item Value
RNA id TU126657
length 342
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G111071
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 8548555 ~ 8548896 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTCTAACTCCTATATctcctctaactcctctcctctaactcctcCCCTCTATCTTCTCTAACTCATATATCTCCTCTCTAACTCCTATCCTCTATCTCCTCTAACTCCTATATCTCCTCTAActactctcctctatctcctctaacTCCTATATCTCCTCTAACTCATATATCTCCTCTCCACTAACTCCTCTAattcctctatctcctctcctctaactcctTTATCTCCTCTCCACtaactcctctatctcctctccactAACTCCTCTAattcctctatctcctctcctctaactcctctatctcctctccactAACTCCTCTAagtcctctatctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126653 lncRNA upstream 6679 8541616 ~ 8541876 (+) True G111067
TU126587 lncRNA upstream 25792 8522040 ~ 8522763 (+) True G111015
TU126559 lncRNA upstream 81526 8466830 ~ 8467029 (+) True G110994
TU126555 lncRNA upstream 81883 8464002 ~ 8466672 (+) True G110991
TU126539 lncRNA upstream 126304 8421960 ~ 8422251 (+) True G110981
TU126782 lncRNA downstream 99843 8648739 ~ 8648943 (+) True G111165
TU126795 lncRNA downstream 117698 8666594 ~ 8667216 (+) True G111178
TU126812 lncRNA downstream 164585 8713481 ~ 8714511 (+) True G111195
TU126823 lncRNA downstream 180403 8729299 ~ 8732801 (+) True G111204
TU126833 lncRNA downstream 192585 8741481 ~ 8745070 (+) True G111212
XM_036937049.1 mRNA upstream 42952 8480516 ~ 8505603 (+) False LOC118936502
XM_036937053.1 mRNA upstream 42952 8480516 ~ 8505603 (+) False LOC118936502
XM_036937056.1 mRNA upstream 42952 8480516 ~ 8505603 (+) False LOC118936502
XM_036937063.1 mRNA upstream 42952 8480516 ~ 8505603 (+) True LOC118936502
XM_036937116.1 mRNA upstream 220825 8267427 ~ 8327730 (+) True LOC110514591
XR_005034903.1 mRNA downstream 78875 8627771 ~ 8645961 (+) True LOC118937640
XM_036937193.1 mRNA downstream 271463 8820359 ~ 9072449 (+) False LOC110518388
XM_036937201.1 mRNA downstream 271464 8820360 ~ 9072449 (+) False LOC110518388
XM_036937197.1 mRNA downstream 271465 8820361 ~ 9072449 (+) False LOC110518388
XM_036937203.1 mRNA downstream 271465 8820361 ~ 9072449 (+) False LOC110518388
TU126159 other upstream 444635 8073366 ~ 8103920 (+) True G110674
TU126124 other upstream 613418 7898596 ~ 7935137 (+) True G110644
TU125754 other upstream 842066 7701982 ~ 7706489 (+) True creb5b
TU125753 other upstream 852313 7615959 ~ 7696242 (+) False creb5b
TU125259 other upstream 1243910 7303028 ~ 7304645 (+) True pde11al
TU126891 other downstream 487908 9036804 ~ 9037901 (+) False LOC110518388
TU127103 other downstream 672589 9221485 ~ 9229025 (+) True LOC110535224
TU127136 other downstream 781373 9330269 ~ 9331616 (+) False G111453
TU127140 other downstream 781373 9330269 ~ 9331616 (+) False G111453
TU127143 other downstream 781373 9330269 ~ 9331616 (+) False G111453

Expression Profile