RNA id: TU126795


Basic Information

Item Value
RNA id TU126795
length 623
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G111178
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 8666594 ~ 8667216 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtagcctagtggttagagcgttggactagtaaccggaaggttgtgagttcaaacccccgagctgacaaggtacaaatctgtcgttctgcccctgaacaaggcagttaacccactgttcccaggccgtcattgaaaataagaatttgttcttaactgacttgcctggttaaataaaggtaaaataaaaaaaataaaaaaaataaaaaaaatatggtcTAATACTGTCCCTCAGGCCCATATTTAGACACGTTGGGAAAGTATTGACTTGTATATCAAAAGGGATATAAAACCATGGATCGATTAGTAATGTGTAGACAAGACTGGTTACAGGCTATAGGCACAACTATAGAATAAATAGCTTTTGCAGAGAAAGCACAGTGCACAGTATGGTAATTGTATAGGGCTACTCTGTCTTAATGACAAAAATCTCACTGTTTGTCTCCTCCAGggctggtttcctggacacagattaaggctAATCCTAGAGTAAAAAGTTCTTTCAATGGACATTCTCAgttgaaagtgctttttagtccaggactaaagttaatctgtgtctgggaaactgcccCACCTAGAGATTTCATTGGTGGATTCCTGAGCCAGTAGATCTGTATAGGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126782 lncRNA upstream 17651 8648739 ~ 8648943 (+) True G111165
TU126657 lncRNA upstream 117698 8548555 ~ 8548896 (+) True G111071
TU126653 lncRNA upstream 124718 8541616 ~ 8541876 (+) True G111067
TU126587 lncRNA upstream 143831 8522040 ~ 8522763 (+) True G111015
TU126559 lncRNA upstream 199565 8466830 ~ 8467029 (+) True G110994
TU126812 lncRNA downstream 46265 8713481 ~ 8714511 (+) True G111195
TU126823 lncRNA downstream 62083 8729299 ~ 8732801 (+) True G111204
TU126833 lncRNA downstream 74265 8741481 ~ 8745070 (+) True G111212
TU126835 lncRNA downstream 84454 8751670 ~ 8752136 (+) True G111214
TU126836 lncRNA downstream 86592 8753808 ~ 8754113 (+) True G111215
XR_005034903.1 mRNA upstream 20633 8627771 ~ 8645961 (+) True LOC118937640
XM_036937049.1 mRNA upstream 160991 8480516 ~ 8505603 (+) False LOC118936502
XM_036937193.1 mRNA downstream 153143 8820359 ~ 9072449 (+) False LOC110518388
XM_036937201.1 mRNA downstream 153144 8820360 ~ 9072449 (+) False LOC110518388
XM_036937197.1 mRNA downstream 153145 8820361 ~ 9072449 (+) False LOC110518388
XM_036937203.1 mRNA downstream 153145 8820361 ~ 9072449 (+) False LOC110518388
XM_036937205.1 mRNA downstream 347677 9014893 ~ 9072449 (+) False LOC110518388
TU126159 other upstream 562674 8073366 ~ 8103920 (+) True G110674
TU126124 other upstream 731457 7898596 ~ 7935137 (+) True G110644
TU125754 other upstream 960105 7701982 ~ 7706489 (+) True creb5b
TU125753 other upstream 970352 7615959 ~ 7696242 (+) False creb5b
TU125259 other upstream 1361949 7303028 ~ 7304645 (+) True pde11al
TU126891 other downstream 369588 9036804 ~ 9037901 (+) False LOC110518388
TU127103 other downstream 554269 9221485 ~ 9229025 (+) True LOC110535224
TU127136 other downstream 663053 9330269 ~ 9331616 (+) False G111453
TU127140 other downstream 663053 9330269 ~ 9331616 (+) False G111453
TU127143 other downstream 663053 9330269 ~ 9331616 (+) False G111453

Expression Profile