RNA id: TU126835


Basic Information

Item Value
RNA id TU126835
length 467
lncRNA type antisense_over
GC content 0.54
exon number 1
gene id G111214
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 8751670 ~ 8752136 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttgtgattctggaggAAGCGACATCCGTCCTTGGCCAGTCTCTGGACCATCTCCAGATGGGACAGGTCTTCCTTGTCGTGCAGGGCACACACACCCCCCGGCTTCAGCGCCGGGGACACAGAGAACATGTACTTCAGGCCACAGTCCCACGACATTACTATAGAGTAGAACCAGCACGgtgtactcctctcctcctctctcacagtGCACtccaaaggtgtgtgtgtgggggatggGCCAGGAAACcttgagtgtgtgtctgtctggctgtttgtctctgtgtgtgtgtctgtgagcgcAGGTGAGTTACGGCCTCCTCTCACTGAGCCAAAGCAGATCCCTGTAGAAGCACCAACAACAGCTCCGGCTGGCTCTCTGGTTGGCCTGCAGATATATagaaatagagagatagagagggctGTGAAACAGCAAGGACTCCAGGTGCCTGTGTTCTATATGCTTAgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126833 lncRNA upstream 6600 8741481 ~ 8745070 (+) True G111212
TU126823 lncRNA upstream 18869 8729299 ~ 8732801 (+) True G111204
TU126812 lncRNA upstream 37159 8713481 ~ 8714511 (+) True G111195
TU126795 lncRNA upstream 84454 8666594 ~ 8667216 (+) True G111178
TU126782 lncRNA upstream 102727 8648739 ~ 8648943 (+) True G111165
TU126836 lncRNA downstream 1672 8753808 ~ 8754113 (+) True G111215
TU126839 lncRNA downstream 7568 8759704 ~ 8759996 (+) True G111218
TU126841 lncRNA downstream 8995 8761131 ~ 8761350 (+) True G111220
TU126865 lncRNA downstream 44147 8796283 ~ 8798144 (+) False G111241
TU126866 lncRNA downstream 44147 8796283 ~ 8798144 (+) True G111241
XR_005034903.1 mRNA upstream 105709 8627771 ~ 8645961 (+) True LOC118937640
XM_036937049.1 mRNA upstream 246067 8480516 ~ 8505603 (+) False LOC118936502
XM_036937193.1 mRNA downstream 68223 8820359 ~ 9072449 (+) False LOC110518388
XM_036937201.1 mRNA downstream 68224 8820360 ~ 9072449 (+) False LOC110518388
XM_036937197.1 mRNA downstream 68225 8820361 ~ 9072449 (+) False LOC110518388
XM_036937203.1 mRNA downstream 68225 8820361 ~ 9072449 (+) False LOC110518388
XM_036937205.1 mRNA downstream 262757 9014893 ~ 9072449 (+) False LOC110518388
TU126159 other upstream 647750 8073366 ~ 8103920 (+) True G110674
TU126124 other upstream 816533 7898596 ~ 7935137 (+) True G110644
TU125754 other upstream 1045181 7701982 ~ 7706489 (+) True creb5b
TU125753 other upstream 1055428 7615959 ~ 7696242 (+) False creb5b
TU125259 other upstream 1447025 7303028 ~ 7304645 (+) True pde11al
TU126891 other downstream 284668 9036804 ~ 9037901 (+) False LOC110518388
TU127103 other downstream 469349 9221485 ~ 9229025 (+) True LOC110535224
TU127136 other downstream 578133 9330269 ~ 9331616 (+) False G111453
TU127140 other downstream 578133 9330269 ~ 9331616 (+) False G111453
TU127143 other downstream 578133 9330269 ~ 9331616 (+) False G111453

Expression Profile