RNA id: TU126930


Basic Information

Item Value
RNA id TU126930
length 276
lncRNA type intronic
GC content 0.46
exon number 1
gene id G111293
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 8903663 ~ 8903938 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtatgtatagtttttgtgtgctctagctAGGGTAGTGGTTCCCAAACATTTTATAGTCCCgcaccccttcaaacattcaacctcagGCTGCGTaccccccctctagcaccagggtcagtcagcacactctcaaatgttgttttttgccatcattgtaagcctgccacacacacactacacactatacgatacatttattaaacataagaatgagtgtgagtttttgtcactccccggctcatgggaagtgacaaagagctcttataaggccaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126928 lncRNA upstream 2708 8900754 ~ 8900955 (+) True G111291
TU126927 lncRNA upstream 3705 8899686 ~ 8899958 (+) True G111290
TU126865 lncRNA upstream 105519 8796283 ~ 8798144 (+) False G111241
TU126866 lncRNA upstream 105519 8796283 ~ 8798144 (+) True G111241
TU126841 lncRNA upstream 142313 8761131 ~ 8761350 (+) True G111220
TU126947 lncRNA downstream 40105 8944043 ~ 8944369 (+) True G111310
TU126952 lncRNA downstream 49117 8953055 ~ 8953304 (+) True G111315
TU126956 lncRNA downstream 54726 8958664 ~ 8959283 (+) True G111319
TU126972 lncRNA downstream 72857 8976795 ~ 8977003 (+) True G111330
TU126975 lncRNA downstream 80697 8984635 ~ 8985071 (+) True G111333
XR_005034903.1 mRNA upstream 257702 8627771 ~ 8645961 (+) True LOC118937640
XM_036937049.1 mRNA upstream 398060 8480516 ~ 8505603 (+) False LOC118936502
XM_036937205.1 mRNA downstream 110955 9014893 ~ 9072449 (+) False LOC110518388
XM_036937224.1 mRNA downstream 186622 9090560 ~ 9097627 (+) False LOC110520725
XM_036937231.1 mRNA downstream 186622 9090560 ~ 9101359 (+) False LOC110520725
XM_036937243.1 mRNA downstream 199574 9103512 ~ 9105845 (+) True LOC110506654
XM_021598146.2 mRNA downstream 202366 9106304 ~ 9110163 (+) False LOC110520726
TU126159 other upstream 799743 8073366 ~ 8103920 (+) True G110674
TU126124 other upstream 968526 7898596 ~ 7935137 (+) True G110644
TU125754 other upstream 1197174 7701982 ~ 7706489 (+) True creb5b
TU125753 other upstream 1207421 7615959 ~ 7696242 (+) False creb5b
TU125259 other upstream 1599018 7303028 ~ 7304645 (+) True pde11al
TU126891 other downstream 132866 9036804 ~ 9037901 (+) False LOC110518388
TU127103 other downstream 317547 9221485 ~ 9229025 (+) True LOC110535224
TU127136 other downstream 426331 9330269 ~ 9331616 (+) False G111453
TU127140 other downstream 426331 9330269 ~ 9331616 (+) False G111453
TU127143 other downstream 426331 9330269 ~ 9331616 (+) False G111453

Expression Profile