RNA id: TU126979


Basic Information

Item Value
RNA id TU126979
length 282
lncRNA type intronic
GC content 0.43
exon number 1
gene id G111335
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 8991951 ~ 8992232 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctaactctaaccctaactcagCCATGGCCCCTGACATACTACAAGAGcactgtgtgagaggtgtgaggggggaggggggcaaaATGGAGGGAAAAGTTAGGGCAATGACATCTAATGATATTTGAGGCACTAGTGGAGTAAAGTTTACTTAGTAaagtttagtttagttttttaggatccccattagatactgcacatgcagcagcttctcttcctggagtccacatGAAACCGACAAATACATGACAAATTACAGAACGGTTATAGACAAGAACAACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126975 lncRNA upstream 6880 8984635 ~ 8985071 (+) True G111333
TU126972 lncRNA upstream 14948 8976795 ~ 8977003 (+) True G111330
TU126956 lncRNA upstream 32668 8958664 ~ 8959283 (+) True G111319
TU126952 lncRNA upstream 38647 8953055 ~ 8953304 (+) True G111315
TU126947 lncRNA upstream 47582 8944043 ~ 8944369 (+) True G111310
TU126985 lncRNA downstream 11671 9003903 ~ 9004175 (+) True G111340
TU126987 lncRNA downstream 13393 9005625 ~ 9006098 (+) True G111342
TU126989 lncRNA downstream 14995 9007227 ~ 9007436 (+) True G111344
TU126993 lncRNA downstream 21818 9014050 ~ 9014424 (+) True G111348
TU126994 lncRNA downstream 22244 9014476 ~ 9014879 (+) True G111349
XR_005034903.1 mRNA upstream 345990 8627771 ~ 8645961 (+) True LOC118937640
XM_036937049.1 mRNA upstream 486348 8480516 ~ 8505603 (+) False LOC118936502
XM_036937205.1 mRNA downstream 22661 9014893 ~ 9072449 (+) False LOC110518388
XM_036937224.1 mRNA downstream 98328 9090560 ~ 9097627 (+) False LOC110520725
XM_036937231.1 mRNA downstream 98328 9090560 ~ 9101359 (+) False LOC110520725
XM_036937243.1 mRNA downstream 111280 9103512 ~ 9105845 (+) True LOC110506654
XM_021598146.2 mRNA downstream 114072 9106304 ~ 9110163 (+) False LOC110520726
TU126159 other upstream 888031 8073366 ~ 8103920 (+) True G110674
TU126124 other upstream 1056814 7898596 ~ 7935137 (+) True G110644
TU125754 other upstream 1285462 7701982 ~ 7706489 (+) True creb5b
TU125753 other upstream 1295709 7615959 ~ 7696242 (+) False creb5b
TU125259 other upstream 1687306 7303028 ~ 7304645 (+) True pde11al
TU126891 other downstream 44572 9036804 ~ 9037901 (+) False LOC110518388
TU127103 other downstream 229253 9221485 ~ 9229025 (+) True LOC110535224
TU127136 other downstream 338037 9330269 ~ 9331616 (+) False G111453
TU127140 other downstream 338037 9330269 ~ 9331616 (+) False G111453
TU127143 other downstream 338037 9330269 ~ 9331616 (+) False G111453

Expression Profile