RNA id: TU126985


Basic Information

Item Value
RNA id TU126985
length 273
lncRNA type intronic
GC content 0.45
exon number 1
gene id G111340
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9003903 ~ 9004175 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTGGCTTAAGCACTTCTGGCAAAGCCTGCGTTCTCCGGTATGGGCCGGGACATTGCAGAGCCGTGAGTGCAGTGTGCAATGCAGGGCTAATGAAGAGCAGAATCAGATAAGAGACTGTTACAAGTTGTATTGTAATGGATAACTATTTGGCCAGAAACCCAAAAAGCCCTTCTAAAATAAATGTTGCTTGCTGACAGACAGTTTGAAAGTTTGGCTGACCCAGTTTTTGGTGAAATGTGAAATGTAAATGAATCCAAGCAGCCAAAGAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126979 lncRNA upstream 11671 8991951 ~ 8992232 (+) True G111335
TU126975 lncRNA upstream 18832 8984635 ~ 8985071 (+) True G111333
TU126972 lncRNA upstream 26900 8976795 ~ 8977003 (+) True G111330
TU126956 lncRNA upstream 44620 8958664 ~ 8959283 (+) True G111319
TU126952 lncRNA upstream 50599 8953055 ~ 8953304 (+) True G111315
TU126987 lncRNA downstream 1450 9005625 ~ 9006098 (+) True G111342
TU126989 lncRNA downstream 3052 9007227 ~ 9007436 (+) True G111344
TU126993 lncRNA downstream 9875 9014050 ~ 9014424 (+) True G111348
TU126994 lncRNA downstream 10301 9014476 ~ 9014879 (+) True G111349
TU126995 lncRNA downstream 11137 9015312 ~ 9015721 (+) True G111350
XR_005034903.1 mRNA upstream 357942 8627771 ~ 8645961 (+) True LOC118937640
XM_036937049.1 mRNA upstream 498300 8480516 ~ 8505603 (+) False LOC118936502
XM_036937205.1 mRNA downstream 10718 9014893 ~ 9072449 (+) False LOC110518388
XM_036937224.1 mRNA downstream 86385 9090560 ~ 9097627 (+) False LOC110520725
XM_036937231.1 mRNA downstream 86385 9090560 ~ 9101359 (+) False LOC110520725
XM_036937243.1 mRNA downstream 99337 9103512 ~ 9105845 (+) True LOC110506654
XM_021598146.2 mRNA downstream 102129 9106304 ~ 9110163 (+) False LOC110520726
TU126159 other upstream 899983 8073366 ~ 8103920 (+) True G110674
TU126124 other upstream 1068766 7898596 ~ 7935137 (+) True G110644
TU125754 other upstream 1297414 7701982 ~ 7706489 (+) True creb5b
TU125753 other upstream 1307661 7615959 ~ 7696242 (+) False creb5b
TU125259 other upstream 1699258 7303028 ~ 7304645 (+) True pde11al
TU126891 other downstream 32629 9036804 ~ 9037901 (+) False LOC110518388
TU127103 other downstream 217310 9221485 ~ 9229025 (+) True LOC110535224
TU127136 other downstream 326094 9330269 ~ 9331616 (+) False G111453
TU127140 other downstream 326094 9330269 ~ 9331616 (+) False G111453
TU127143 other downstream 326094 9330269 ~ 9331616 (+) False G111453

Expression Profile