RNA id: TCONS_00029918


Basic Information

Item Value
RNA id TCONS_00029918
length 395
lncRNA type read_through
GC content 0.39
exon number 4
gene id XLOC_014105
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 28114503 ~ 28262897 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGGCCTACTATGAAAGACAATTACCCCACAGATTGAATTAACAAATAATGCTagatgaattgtttttttttatcataaaaataaaacaaacacgttTGAAAGCATTTTATCATTCGTCGGCGATGAATTGGGGCTTTGTGATAAAAACGGTTGCGAGTTGTGAAGCTAGTGGACAACCCTAACTTACCTGTCCTGCACTGCTTGACTCAACTATCCCAGAGATAACTTCAATCAATCAGCAATAAAATATCTACAACTAAATCAACTGCATCAAACATTTGACAGGAGTGTGCTGCACTTCACTGGCAATCAATTTACAAAGACATCCACCGGTCAAAGTCAGtGCATAACCAATCACATTCAAATGATGGAGTCCGACCCACATGAGGTGCTC

Function

GO:

id name namespace
GO:0048468 cell development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030182 neuron differentiation biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specific molecular_function
GO:0003677 DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029917 lncRNA upstream 138031 27974665 ~ 27976483 (+) True XLOC_014104
TCONS_00028103 lncRNA upstream 222459 27887318 ~ 27892055 (+) True XLOC_014102
TCONS_00028095 lncRNA upstream 759648 27354345 ~ 27354866 (+) True XLOC_014098
TCONS_00029916 lncRNA upstream 1072986 27033873 ~ 27041528 (+) True XLOC_014097
TCONS_00028060 lncRNA upstream 2961937 25151416 ~ 25152577 (+) True XLOC_014079
TCONS_00028119 lncRNA downstream 601285 28788968 ~ 28824390 (+) False XLOC_014109
TCONS_00029923 lncRNA downstream 603027 28790710 ~ 28824390 (+) False XLOC_014109
TCONS_00029925 lncRNA downstream 603027 28790710 ~ 28824390 (+) False XLOC_014109
TCONS_00029927 lncRNA downstream 603027 28790710 ~ 28824390 (+) False XLOC_014109
TCONS_00029926 lncRNA downstream 603027 28790710 ~ 28824390 (+) False XLOC_014109
TCONS_00028104 mRNA upstream 140363 27970292 ~ 27974151 (+) False XLOC_014103
TCONS_00028105 mRNA upstream 141693 27970383 ~ 27972821 (+) True XLOC_014103
TCONS_00028101 mRNA upstream 212005 27858866 ~ 27902509 (+) False XLOC_014102
TCONS_00028102 mRNA upstream 212504 27859546 ~ 27902010 (+) False XLOC_014102
TCONS_00028100 mRNA upstream 505965 27589201 ~ 27608549 (+) True XLOC_014101
TCONS_00028111 mRNA downstream 68393 28256076 ~ 28261976 (+) True XLOC_014105
TCONS_00028112 mRNA downstream 96437 28284120 ~ 28290213 (+) True XLOC_014107
TCONS_00028113 mRNA downstream 103379 28291062 ~ 28333840 (+) False XLOC_014108
TCONS_00028115 mRNA downstream 103693 28291376 ~ 28320139 (+) False XLOC_014108
TCONS_00028116 mRNA downstream 103757 28291440 ~ 28334155 (+) False XLOC_014108
TCONS_00028091 other upstream 1183081 26928624 ~ 26931433 (+) True XLOC_014095
TCONS_00028082 other upstream 1308632 26805766 ~ 26805882 (+) True XLOC_014093
TCONS_00028077 other upstream 1537806 26576594 ~ 26576708 (+) True XLOC_014090
TCONS_00028073 other upstream 1921578 26192822 ~ 26192936 (+) True XLOC_014087
TCONS_00028068 other upstream 2602952 25508793 ~ 25511562 (+) True XLOC_014083
TCONS_00028114 other downstream 103693 28291376 ~ 28315953 (+) False XLOC_014108
TCONS_00028117 other downstream 133996 28321679 ~ 28331097 (+) False XLOC_014108
TCONS_00028118 other downstream 143544 28331227 ~ 28334164 (+) True XLOC_014108
TCONS_00028122 other downstream 1015459 29203142 ~ 29203257 (+) True XLOC_014111
TCONS_00028123 other downstream 1116164 29303847 ~ 29320883 (+) False XLOC_014112

Expression Profile

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