RNA id: TU126994


Basic Information

Item Value
RNA id TU126994
length 404
lncRNA type intronic
GC content 0.34
exon number 1
gene id G111349
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9014476 ~ 9014879 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctctctgtctctctctctttctctctttctttgtctctctgtctcctctctccttctctctccttctctcactttctctgtcctctctttctatctcgtccactctctctctgtcctttgaatctctgtctttctctctctatccctctttctcctctgggAGAGAGTGTCTCTGCATTTCCTGCTCTAACCGATtattctcccctctgctccttcTTCCTGGCCAAGTGTAACACACAGCATGGTTTTGATCATGTCCCGATCAGGCATTCACTTTATTACACACAGATCTTCACATCCCTTCCTtttttttctctgtttctctgtctttccttctcttttctgGCTTTACATTCTGACTGTACCATGCCTTGGCATTATTCACCCCTACAAGTACAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126993 lncRNA upstream 52 9014050 ~ 9014424 (+) True G111348
TU126989 lncRNA upstream 7040 9007227 ~ 9007436 (+) True G111344
TU126987 lncRNA upstream 8378 9005625 ~ 9006098 (+) True G111342
TU126985 lncRNA upstream 10301 9003903 ~ 9004175 (+) True G111340
TU126979 lncRNA upstream 22244 8991951 ~ 8992232 (+) True G111335
TU126995 lncRNA downstream 433 9015312 ~ 9015721 (+) True G111350
TU127004 lncRNA downstream 15147 9030026 ~ 9030239 (+) True G111358
TU126892 lncRNA downstream 18217 9033096 ~ 9036632 (+) False LOC110518388
TU127005 lncRNA downstream 23444 9038323 ~ 9038528 (+) True G111359
TU127011 lncRNA downstream 40405 9055284 ~ 9055822 (+) True G111365
XR_005034903.1 mRNA upstream 368515 8627771 ~ 8645961 (+) True LOC118937640
XM_036937049.1 mRNA upstream 508873 8480516 ~ 8505603 (+) False LOC118936502
XM_036937205.1 mRNA downstream 14 9014893 ~ 9072449 (+) False LOC110518388
XM_036937224.1 mRNA downstream 75681 9090560 ~ 9097627 (+) False LOC110520725
XM_036937231.1 mRNA downstream 75681 9090560 ~ 9101359 (+) False LOC110520725
XM_036937243.1 mRNA downstream 88633 9103512 ~ 9105845 (+) True LOC110506654
XM_021598146.2 mRNA downstream 91425 9106304 ~ 9110163 (+) False LOC110520726
TU126159 other upstream 910556 8073366 ~ 8103920 (+) True G110674
TU126124 other upstream 1079339 7898596 ~ 7935137 (+) True G110644
TU125754 other upstream 1307987 7701982 ~ 7706489 (+) True creb5b
TU125753 other upstream 1318234 7615959 ~ 7696242 (+) False creb5b
TU125259 other upstream 1709831 7303028 ~ 7304645 (+) True pde11al
TU126891 other downstream 21925 9036804 ~ 9037901 (+) False LOC110518388
TU127103 other downstream 206606 9221485 ~ 9229025 (+) True LOC110535224
TU127136 other downstream 315390 9330269 ~ 9331616 (+) False G111453
TU127140 other downstream 315390 9330269 ~ 9331616 (+) False G111453
TU127143 other downstream 315390 9330269 ~ 9331616 (+) False G111453

Expression Profile