RNA id: TU127359


Basic Information

Item Value
RNA id TU127359
length 454
lncRNA type antisense_over
GC content 0.45
exon number 1
gene id G111638
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9031043 ~ 9031496 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACTGATGACCataataaacagacagacagacaagtatGTCCAGTTTCTAAACATCTCCAACTCATCTGATATATTGTGGAACAAAGCTCAGACTCTTATTCATCCCAGACAAAACTCCATCACTCCAGCCGGTAACCGTACAGATAAATGTATAAAGCTGTGGACAAAGTAGTTCTGTGTTTGATTCTGGTGAATTGGTTTGGGACTTTTAATGAGGGAACTGAACTGCAATGTAAACGTCAAAAGGACAATTCCATCTATGAGTAGTGTGATGTGATGCAGGTTGGGACTCACTTGAAGCgggtcctctcctccctctcgatTTTCAGCAGTCGTTCCTCCCTctcttgtctcctcctctctctctctgcagtcagaGACTCCTGGTGTTGTCTGTAGGAGGAGGACAACAAGCTCCCCAGAGAAGGTCTGGGTAACCCAACAGAGGAAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127358 lncRNA downstream 166 9030557 ~ 9030877 (-) True G111637
TU127351 lncRNA downstream 9618 9021188 ~ 9021425 (-) True G111630
TU127350 lncRNA downstream 10107 9020676 ~ 9020936 (-) True G111629
TU127348 lncRNA downstream 15441 9015256 ~ 9015602 (-) True G111627
TU127346 lncRNA downstream 22702 9008084 ~ 9008341 (-) True G111625
TU127372 lncRNA upstream 19418 9050914 ~ 9051894 (-) True G111651
TU127377 lncRNA upstream 34164 9065660 ~ 9065987 (-) True G111656
TU127385 lncRNA upstream 37217 9068713 ~ 9070058 (-) True G111664
TU127383 lncRNA upstream 38893 9070389 ~ 9072446 (-) True G111662
TU127386 lncRNA upstream 42600 9074096 ~ 9074608 (-) True G111665
XM_036937187.1 mRNA downstream 211966 8804202 ~ 8819077 (-) False LOC110514444
XM_036937181.1 mRNA downstream 229040 8791636 ~ 8802003 (-) True LOC110516599
XM_036937178.1 mRNA downstream 248056 8769881 ~ 8782987 (-) False LOC110519098
XM_036937174.1 mRNA downstream 278879 8693136 ~ 8752164 (-) False LOC110535184
XM_036937168.1 mRNA downstream 294103 8693136 ~ 8736940 (-) False LOC110535184
XM_036937207.1 mRNA upstream 43277 9074773 ~ 9087920 (-) False LOC110506642
XM_036937211.1 mRNA upstream 43277 9074773 ~ 9087920 (-) False LOC110506642
XM_036937217.1 mRNA upstream 43277 9074773 ~ 9087920 (-) True LOC110506642
XM_036937247.1 mRNA upstream 85070 9116566 ~ 9141714 (-) False LOC110506677
XM_036937251.1 mRNA upstream 85070 9116566 ~ 9141714 (-) True LOC110506677
TU127230 other downstream 258223 8771536 ~ 8772820 (-) True LOC110519098
TU127197 other downstream 294645 8705304 ~ 8736398 (-) True LOC110535184
TU126626 other downstream 508282 8522002 ~ 8522761 (-) True G111044
TU126623 other downstream 508334 8522002 ~ 8522709 (-) False G111044
TU126633 other downstream 525439 8502208 ~ 8505604 (-) True G111047
TU127371 other upstream 18793 9050289 ~ 9050798 (-) True G111650
TU127380 other upstream 36116 9067612 ~ 9068062 (-) True G111659
TU127651 other upstream 407866 9439362 ~ 9439938 (-) True G111855
TU127773 other upstream 603041 9634537 ~ 9635130 (-) True G111955
TU127893 other upstream 729804 9761300 ~ 9761665 (-) True G112066

Expression Profile