RNA id: TU127005


Basic Information

Item Value
RNA id TU127005
length 206
lncRNA type intronic
GC content 0.48
exon number 1
gene id G111359
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9038323 ~ 9038528 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCACCTAAAGCATTTAGGGGCGGGTTCCCGGACACAGACTAAGACTAGTCCAGGAAACAGCTCCATAGATGTTTCCAACTTGTCCTCTTCCTCCAGAGCACATAGGTTTAGACATCAGGTGTGGATCTACTAACTACACCTTCTGTTCTGTATACACTCAGCAGAACAGCACTAACCAGCTTCACCGTGTTGGTAAAGACTGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126892 lncRNA upstream 1691 9033096 ~ 9036632 (+) False LOC110518388
TU127004 lncRNA upstream 8084 9030026 ~ 9030239 (+) True G111358
TU126995 lncRNA upstream 22602 9015312 ~ 9015721 (+) True G111350
TU126994 lncRNA upstream 23444 9014476 ~ 9014879 (+) True G111349
TU126993 lncRNA upstream 23899 9014050 ~ 9014424 (+) True G111348
TU127011 lncRNA downstream 16756 9055284 ~ 9055822 (+) True G111365
TU127013 lncRNA downstream 27018 9065546 ~ 9065912 (+) True G111367
TU127014 lncRNA downstream 27853 9066381 ~ 9066666 (+) True G111368
TU126886 lncRNA downstream 31861 9070389 ~ 9072449 (+) True LOC110518388
TU127027 lncRNA downstream 58306 9096834 ~ 9098911 (+) True LOC110520725
XR_005034903.1 mRNA upstream 392362 8627771 ~ 8645961 (+) True LOC118937640
XM_036937049.1 mRNA upstream 532720 8480516 ~ 8505603 (+) False LOC118936502
XM_036937224.1 mRNA downstream 52032 9090560 ~ 9097627 (+) False LOC110520725
XM_036937231.1 mRNA downstream 52032 9090560 ~ 9101359 (+) False LOC110520725
XM_036937243.1 mRNA downstream 64984 9103512 ~ 9105845 (+) True LOC110506654
XM_021598146.2 mRNA downstream 67776 9106304 ~ 9110163 (+) False LOC110520726
XR_005034916.1 mRNA downstream 67776 9106304 ~ 9110772 (+) True LOC110520726
TU126891 other upstream 422 9036804 ~ 9037901 (+) False LOC110518388
TU126159 other upstream 934403 8073366 ~ 8103920 (+) True G110674
TU126124 other upstream 1103186 7898596 ~ 7935137 (+) True G110644
TU125754 other upstream 1331834 7701982 ~ 7706489 (+) True creb5b
TU125753 other upstream 1342081 7615959 ~ 7696242 (+) False creb5b
TU127103 other downstream 182957 9221485 ~ 9229025 (+) True LOC110535224
TU127136 other downstream 291741 9330269 ~ 9331616 (+) False G111453
TU127140 other downstream 291741 9330269 ~ 9331616 (+) False G111453
TU127143 other downstream 291741 9330269 ~ 9331616 (+) False G111453
TU127145 other downstream 291741 9330269 ~ 9331616 (+) False G111453

Expression Profile