RNA id: TU127385


Basic Information

Item Value
RNA id TU127385
length 1346
lncRNA type antisense_over
GC content 0.52
exon number 1
gene id G111664
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9068713 ~ 9070058 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCTGATTGGTACATCAGTGTGTGTCAAGGATTTCCCCTTCCTTTCCTCTAAATATCCAACTTCTACATCCAGTGCAAATATTCCTTCTCTGAGCACCTTTTTCTCACACATTAAAGTATTTTAAAACCCAAAAAACTACCACAGTAGTATAGTAGAACAAAACAGCCTGTGGacacagacatttttttttttttatataaacaaAAATTGTTCAAACTAAAAATACTATCtgacaccaagcccaacacacaAGCTCATCATAAGTGGGGATAGATAACATCAATGCTAACGTCTTTAACATCAATGCTAACGTCTTTAACATCAATGCTAACTTATTTAGCATCGATGCTAACTAATTTAGCGTCAATGCTAACTTATTTAGCGTCAATGCTAACTTATTTAGCGTCAATGCTAACTTCTTTACTATTCAACTCCGAGGCCTTTTTGGTTCAGACACAAGTCCACAGTGATTCAAGCACTCGCAAGTCCCTCCCTTTAGAAGTCCTGAGGCTAAATGTCTTCTGTGTAGGTAAGTCTCAGTTTGTATCTTTCAGTCATAGGGTGAATCTCAATTGAGGAAAAGGTTAGGGAGGACGAACCTCAGATCTAGTCCTCCAATGCCTTGTGTAGACAGGTGAGGATAGAAGAcacgaggaatcaaggaaatacaaCTGAGATTCACCACTAGTCATGTGGTCACTGTGGGCTTCATCAAGTGATTAAGACTTACAGTTGGGATGTGAGCTGTTCCTCAAAGGCCTCAGCCTCATATTCAAAGGTTAGGAGAAACAACTGATTGGAACAACACCATTAAGAAACACTCAAGTCGGCACAGCAGCATAGTGTAGTGGTTTGGATGCTGAACTttacctgagtgtgtgtgtgtggagctgaGTCAGCTGGATCACTGAACCCCTTTAACTGCCCCTATACGAATACCACTTTGTTCCACTGAAAACCATCTATTATCCTGGATGAGGACCATATTCCTCATGGTCTCTTCCTGAACATTGTTTACCATCTTAACCAGGTGGAACACTGTGTCACAGCTACCTGCACAAACCACAGACAGGAAGATGAGCTACAGTCATCATAAAGCTGAACCAGGGGAAAGACCAAGCGAAGCTATGGTGCAGcagttgactggctggctggatgagcaagggttagaggtcaggggtcagtgaAGGGCGGGGCGGGCGGTAAGAGGGTTTCccaggtgtctgtgtgtgctgtgctgccgGATCCAGCTCTACTTCTCTTCCTGTCACACAGCCATCTCTGAACCACTGGACAACCCCAAGGCATTGGCCTCCTCTGGCGTCAGACCGCTTTTCAGTGTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127377 lncRNA downstream 2726 9065660 ~ 9065987 (-) True G111656
TU127372 lncRNA downstream 16819 9050914 ~ 9051894 (-) True G111651
TU127359 lncRNA downstream 37217 9031043 ~ 9031496 (-) True G111638
TU127358 lncRNA downstream 37836 9030557 ~ 9030877 (-) True G111637
TU127351 lncRNA downstream 47288 9021188 ~ 9021425 (-) True G111630
TU127383 lncRNA upstream 331 9070389 ~ 9072446 (-) True G111662
TU127386 lncRNA upstream 4038 9074096 ~ 9074608 (-) True G111665
TU127390 lncRNA upstream 67213 9137271 ~ 9138195 (-) False G111667
TU127392 lncRNA upstream 67213 9137271 ~ 9138195 (-) False G111667
TU127394 lncRNA upstream 67213 9137271 ~ 9138195 (-) True G111667
XM_036937187.1 mRNA downstream 249636 8804202 ~ 8819077 (-) False LOC110514444
XM_036937181.1 mRNA downstream 266710 8791636 ~ 8802003 (-) True LOC110516599
XM_036937178.1 mRNA downstream 285726 8769881 ~ 8782987 (-) False LOC110519098
XM_036937174.1 mRNA downstream 316549 8693136 ~ 8752164 (-) False LOC110535184
XM_036937168.1 mRNA downstream 331773 8693136 ~ 8736940 (-) False LOC110535184
XM_036937207.1 mRNA upstream 4715 9074773 ~ 9087920 (-) False LOC110506642
XM_036937211.1 mRNA upstream 4715 9074773 ~ 9087920 (-) False LOC110506642
XM_036937217.1 mRNA upstream 4715 9074773 ~ 9087920 (-) True LOC110506642
XM_036937247.1 mRNA upstream 46508 9116566 ~ 9141714 (-) False LOC110506677
XM_036937251.1 mRNA upstream 46508 9116566 ~ 9141714 (-) True LOC110506677
TU127380 other downstream 651 9067612 ~ 9068062 (-) True G111659
TU127371 other downstream 17915 9050289 ~ 9050798 (-) True G111650
TU127230 other downstream 295893 8771536 ~ 8772820 (-) True LOC110519098
TU127197 other downstream 332315 8705304 ~ 8736398 (-) True LOC110535184
TU126626 other downstream 545952 8522002 ~ 8522761 (-) True G111044
TU127651 other upstream 369304 9439362 ~ 9439938 (-) True G111855
TU127773 other upstream 564479 9634537 ~ 9635130 (-) True G111955
TU127893 other upstream 691242 9761300 ~ 9761665 (-) True G112066
TU127903 other upstream 708953 9779011 ~ 9780455 (-) True G112076
TU128303 other upstream 930672 10000730 ~ 10003643 (-) False LOC110493960

Expression Profile