RNA id: TU126889


Basic Information

Item Value
RNA id TU126889
length 2218
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G111258
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9124251 ~ 9131154 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAAAGTGATTCAACTGTACCTGTGCAGCCTCGTCCCAATAGTTGTAGACAACAGGAGCAATAGACATTTGCTCAAATCTTTTGACTGAGTACGGCAGCCTCAGAGAGACAAAAACCTTCTTAAACACACGGAACTCATGTGGTTCTGCCACACAGATGCCTGCaggagggacacacacagacaggtccaTTACTCTCCAGAATGACACCACACGTTCCTTACTGTCTAGGTACAGGAATATGAACCAATAGAGGAGGAAGATGTTACCATGAGAAGCAGACAAGCTGACAGCCTGTATCTCCCAGGTGGTGATGGAATCAGGCAGAGCCACAGTATGACtacgggagacagagagagagacaaattacAATAGTGTTTCAGACACATGGCGCCGATATACTGTGTGTCTAAATGTCCATTTCTCACCTTCCTTTGCCGTTTATATCGACCACTGCGAATGCAAAGCTTGGGGGGAAACTTCTGCGTATTTGCTGATTGGTTGTGTCAAAAAAGTCTTCGATGTCTGTGGCACTCgcagctgagaggagagagtgtagaCTAAAGGTGTCACAATAATATAACCTTTTAAGATCGTATTCTCATCCAATCCTTTTAAGTTATAACAAGTCAGACATGTCTGTCTAAAGGATAGTGTCTGTTATCATTTTGTTACCATGTTATACATGTTAGTGTCAGGTgggtgaatgaggacccaaaagcgaattaacaaaacagagtttctttaatgacgaaacacacgtggctcagatggacaggcagattccgacaggacaggacaaggttggatgaacaggcagattccgacaggacaggacaaggttacagcaaacacgacgatagtctggttcaggcatgagaaacacaaacgagaatccgacaaagacagaagcaggaacagagagagatatagagacctaatcagagggaaaaagggaacaggtgggaaaaggggtgaacgaggtagttagaggagacaaggaacagctgggggaaggagggtaagaaaaggtaacctaatacgaccagcagagggagacagggtgaagagaaagaacaggaacaagacacaacatgacaatacatgacagttagAATGGTAATATCCCCAACAATCAAGTCATCCTCACTCCTGCCATGTCCTCTCTGGGCGTCGTCTCGTTTCTTCTTCTCCCTCAACTTCTCTCCCTCTATGCAGCAGTCCAGGAAGGCCTTGACACAGACACGGTCCTTATTGGCTCGTGCCACTCTCTCGGCTCTCTGCTGACACGTCCTCAGCATGGGGATCAGGGACAAGCCATGAGAACAACACTCCTGCAGCTTGGCGTCTGAGTAACTGGATTCTGGGAGTTGGAGATGGTGAGGTAGTGACAAAAGGTTTTAGTTCGTACCTGCCAGGACTGATGAACAGTCTCTCCCACCACCTCAGGCAGCAGTTAGTGACAGTCAATAGTAAAGTAACGTTGTAATACTTATGGACACCATCTGCTTCTGGAGGTCCAGAGAACGCCTCTGTCGTCTGAAGCCTGACTCACAGTTAAACCCtaagacaaacacacatacagtagggtGAAGACCATCAACATAAAACATCAACATATTGTGGGAACATGTAGGTTTTGAGCAACTATGATGTCATTAATGCTTTGTTGAAATGTACGTCTGAGTTGGTGTTTTTTTTTCTATTTGTTTTTCCTTTATGTTGAAGGTTGGGATTTAAGTCCCAGACAATGTCATGTCTAGTTTAGTGGATCCATGTCTGTGAAATGTTAAGTTGTCTACCTCCTAAAggggttttaaccctatcccagagAACATCATTCAGAAACTATGGACCAAAGAAGAAGTAGTGTAGACACTAGACAGCTGTATTGTTTAATCACACTACGTTCGTCATACCCTTCCTCATCCTAGATAGCACATGAGAGTTGGAGATGAATGACAAGCCAGCATCGTTCAACACAGAGGCTGTATCTGAGCCGCCACCGTATGAGCAACCAAGGTCATAGGACTGCATGGACGAGAATACCTGTGAACAGCACACAAAATATTCACACTATTAGTCAAAAAGAGCCGTTTGGTCTTTATTGCATAGAATATATTTATACCTGTACATTATAAGGAGTGCGTTTTAGAGGAAACAATGTTGAGGAGACAATATGTATAATTATTCTTTAGTAAATATTAGcttgtatatg

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126884 lncRNA upstream 36 9119930 ~ 9124215 (+) False G111254
TU126885 lncRNA upstream 36 9119930 ~ 9124215 (+) False G111254
TU126883 lncRNA upstream 254 9123472 ~ 9123997 (+) True G111254
TU126882 lncRNA upstream 2839 9116533 ~ 9121412 (+) False G111254
TU127027 lncRNA upstream 25340 9096834 ~ 9098911 (+) True LOC110520725
TU126888 lncRNA downstream 7256 9138410 ~ 9144906 (+) True G111257
TU127040 lncRNA downstream 14556 9145710 ~ 9146042 (+) True G111384
TU127042 lncRNA downstream 17702 9148856 ~ 9149078 (+) True G111386
TU127050 lncRNA downstream 40174 9171328 ~ 9171571 (+) True G111394
TU127064 lncRNA downstream 65091 9196245 ~ 9196496 (+) True G111398
XR_005034916.1 mRNA upstream 13479 9106304 ~ 9110772 (+) True LOC110520726
XM_021598146.2 mRNA upstream 14088 9106304 ~ 9110163 (+) False LOC110520726
XM_036937243.1 mRNA upstream 18406 9103512 ~ 9105845 (+) True LOC110506654
XM_036937231.1 mRNA upstream 22892 9090560 ~ 9101359 (+) False LOC110520725
XM_036937224.1 mRNA upstream 26624 9090560 ~ 9097627 (+) False LOC110520725
XM_036937254.1 mRNA downstream 18019 9149173 ~ 9168951 (+) False LOC110534026
XM_036937258.1 mRNA downstream 18019 9149173 ~ 9168951 (+) False LOC110534026
XM_036937260.1 mRNA downstream 18019 9149173 ~ 9168951 (+) True LOC110534026
XM_036937271.1 mRNA downstream 44516 9175670 ~ 9189203 (+) True LOC110535199
XM_036937281.1 mRNA downstream 80920 9212074 ~ 9215140 (+) False LOC118937651
TU126891 other upstream 86350 9036804 ~ 9037901 (+) False LOC110518388
TU126159 other upstream 1020331 8073366 ~ 8103920 (+) True G110674
TU126124 other upstream 1189114 7898596 ~ 7935137 (+) True G110644
TU125754 other upstream 1417762 7701982 ~ 7706489 (+) True creb5b
TU125753 other upstream 1428009 7615959 ~ 7696242 (+) False creb5b
TU127103 other downstream 90331 9221485 ~ 9229025 (+) True LOC110535224
TU127136 other downstream 199115 9330269 ~ 9331616 (+) False G111453
TU127140 other downstream 199115 9330269 ~ 9331616 (+) False G111453
TU127143 other downstream 199115 9330269 ~ 9331616 (+) False G111453
TU127145 other downstream 199115 9330269 ~ 9331616 (+) False G111453

Expression Profile