RNA id: TU127050


Basic Information

Item Value
RNA id TU127050
length 244
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G111394
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9171328 ~ 9171571 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actttgtttacatactcatctcatttatacatactgtacccgataccatctactgtatcttgcctatgctgctctgtaccatcactcattcatatatccttatgtacatattctttatccccttacactgtgtacaagacagtagttttggaattgttagttagattacttgttattactgcattgccggaactagaagcacaagcatttcgctacactcgcattaacatctgctaaccatgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127042 lncRNA upstream 22250 9148856 ~ 9149078 (+) True G111386
TU127040 lncRNA upstream 25286 9145710 ~ 9146042 (+) True G111384
TU126888 lncRNA upstream 26422 9138410 ~ 9144906 (+) True G111257
TU126889 lncRNA upstream 40174 9124251 ~ 9131154 (+) True G111258
TU126885 lncRNA upstream 47113 9119930 ~ 9124215 (+) False G111254
TU127064 lncRNA downstream 24674 9196245 ~ 9196496 (+) True G111398
TU127058 lncRNA downstream 43094 9214665 ~ 9216058 (+) True LOC118937651
TU127100 lncRNA downstream 47156 9218727 ~ 9223905 (+) True G111422
TU127112 lncRNA downstream 63778 9235349 ~ 9235558 (+) True G111433
TU127079 lncRNA downstream 73874 9245445 ~ 9247633 (+) True G111405
XM_036937254.1 mRNA upstream 2377 9149173 ~ 9168951 (+) False LOC110534026
XM_036937258.1 mRNA upstream 2377 9149173 ~ 9168951 (+) False LOC110534026
XM_036937260.1 mRNA upstream 2377 9149173 ~ 9168951 (+) True LOC110534026
XR_005034916.1 mRNA upstream 60556 9106304 ~ 9110772 (+) True LOC110520726
XM_021598146.2 mRNA upstream 61165 9106304 ~ 9110163 (+) False LOC110520726
XM_036937271.1 mRNA downstream 4099 9175670 ~ 9189203 (+) True LOC110535199
XM_036937281.1 mRNA downstream 40503 9212074 ~ 9215140 (+) False LOC118937651
XM_021620097.2 mRNA downstream 49847 9221418 ~ 9228300 (+) False LOC110535224
XM_036937288.1 mRNA downstream 68325 9239896 ~ 9243612 (+) False LOC110535231
XM_036937290.1 mRNA downstream 68379 9239950 ~ 9243612 (+) True LOC110535231
TU126891 other upstream 133427 9036804 ~ 9037901 (+) False LOC110518388
TU126159 other upstream 1067408 8073366 ~ 8103920 (+) True G110674
TU126124 other upstream 1236191 7898596 ~ 7935137 (+) True G110644
TU125754 other upstream 1464839 7701982 ~ 7706489 (+) True creb5b
TU125753 other upstream 1475086 7615959 ~ 7696242 (+) False creb5b
TU127103 other downstream 49914 9221485 ~ 9229025 (+) True LOC110535224
TU127136 other downstream 158698 9330269 ~ 9331616 (+) False G111453
TU127140 other downstream 158698 9330269 ~ 9331616 (+) False G111453
TU127143 other downstream 158698 9330269 ~ 9331616 (+) False G111453
TU127145 other downstream 158698 9330269 ~ 9331616 (+) False G111453

Expression Profile