RNA id: TCONS_00028108


Basic Information

Item Value
RNA id TCONS_00028108
length 2907
RNA type mRNA
GC content 0.40
exon number 7
gene id XLOC_014105
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 28114503 ~ 28262897 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTACTGCCCTCTTCAGCTTTGACTGCATCATATATTATTTGTTGCAGGCTTGACTCAACTATCCCAGAGATAACTTCAATCAATCAGCAATAAAATATCTACAACTAAATCAACTGCATCAAACATTTGACAGGAGTGTGCTGCACTTCACTGGCAATCAATTTACAAAGACATCCACCGGTCAAAGTCAGCTCAAGCACGTTATGTTCGTGTCATGCTGCGGTCTGTGGTGGCTTTAGTGTAAAGAGACGAACAGAAACAGGAAAAGGACGCTTATCTCCAGTTGATGGAAGATATTGGTGATAAACTGATGACCCGCCGCGGGACTGCAGCTTTCTCTGTGCAGGACACTCATCATGTCATTTACACAGTTTGGTTATTCATACCCTGCAGCACCACAGCTTTTAATGTCTTCTAATGCTCTGAGCACCTGCTTTGAGTCTAGTGGTTCTCTGCTAGACTCTGGAGTGCCGACTTCTCCTCAAAACTCACTTTACTGCCCCGTGTACGAAAGTAGGCTTGTGGCCTCCAGCCGGCATGAGCTGATCCCTACTGCGGTCTATGGCAACTCCTGTTCAAAAAATCATGTTTACGACTCCTGCAGCACTTACGGTCCAGATTCAGCCGCATGCTATCCTCTGGGTAAACTCAATGAGAAAGATGGAGTGCAAACTGGACATTCAAGAGTTACCCAAAGCTCTGCATATTATCCCTACGACTACCCAATTGGACAATACTCATATGATCGATATGGATATGGATCTGTAGATGTGGGGACAAGAAGAAAGAATGCCACCAGAGAGACCACCAGCACATTGAAAGCATGGTTGCAGGAACATAAAAAGAATCCGTATCCTACAAAGGGTGAGAAGATCATGTTGGCTATCATCACTAAGATGACCCTTACGCAGGTCTCCACCTGGTTTGCCAACGCACGCCGGAGACTCAAGAAGGAGAATAAGATGACGTGGTCACCACGTAACAAGAACTCAGATGAGAAGGAGTGTGACGACGACCAAGAAGATCTGGATGAAGCGCAGGAGGAGCCAATAAAAACTGAACAAGATTTCAATGACAACCATGGAAAGGACGATACAGATCAACTTCACAGCGATCTGGATGATTTCGATCTAGTGGAATCGGATGGCTCTGAGTGCGAATCGAAACCATCTTTTGTTGTGCACGTTCACTCAGAAACCAGCGACCACCCAGAAACCCACTTTAAAGATGCTTTTCATGAATCCGTTACCGAGCTTACAAGAGGTGTCCACAAATTTAGCGAAGACCGTCTGAGAGCACCTGCTGAGGATCACCAAATGGCAAAGTTTTACCTTCAACAAGGCCAAAAGACCATTGAGACCAAGCCGAAAATCTGGTCGCTTGCACAGACCGCTACATCGTTAAACCAAGTCGATTATTCATCATGCATGCATAAACGAACAGCCTGCCCTTCTTCAAACTGTGACTCCGATTCAGAAATGACAAAGAGGAAACAAGAGTCTCCAGTAGCTACTCTGAGGAACTGGGTGGATGGAGTGTTTCACGATCCCCTATTCAGGCACAACAACCTAAACCAAACTTTCAGCAACTCCACAGAGTTATGGACTGATGCCATTTCCTCACAGAATAACTACCATGAACACTCAGGAACACCTATTACTTCCTCTCATGCTTAATAGTGGtgtttttttcatacattttgtAGCACCATCACAAAATTAACATGTTAGCCAATCTCATTAGTTTCATCCTGTAAGCTTTTGTCATTTAAGAAATCTTGAGAGTCatgaactttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataacatttttcaaCACCTCAATGTAGATTTATGGATATTGCCACTTTTACCACTTTGTAAAATAATGTAATCACTGCTGTAAAATACCACCGTACACAATGCTCCCTAATATAAAGTCTCAGTACCTCATCTAACATCCCTCAGAAATAAAAAAGCCATTTTGCGAGGAAGAAAAAAATcgctgtccgtggtgctgaaaTGCTTCCAAGAGCACATTGGCCACTGGAGTGGTTTTTATGCGGTTGCATTTGTTTGACTGACATTGTTCCCAGTGGAATCACACAACATGGCTTTACATACATCAATAATTTGAACCCTTCCACACAATGTGCTTCAGACTGAGAGTTAAGTTAGAATCATTCGGTCGTGACAAATATAAATACCCAGGGGCTCATACTGCTAAACTGGTAACTCAGTGGTACTTCTAAGAATTGTATTCAGAGAAACAATGGTTTTCTTTAAGtgactgatatggcaagccagtTTTACGTTTATTCCTTAAAACTCcttatattaatgtttatattggTTAATAACAATTGGAACAAACAATTAATAACCAGGCATGAATGTCTAATCAGTGAGGATTAAAACTATACTGGAATACACTTGTAAGTAAGCTAAAACTGTACAAGGCACTTCTCAAATTGGAATACTCACAAGTAGGAAACaaattatttgtacattttttaatacaattatttatacatGTATTGGCATACAGTTCTAATGTGCAATTGAATAGTCACTTGAAACAATTTAAGAAATTTAGTATAAAATGCAATAAGTAAAAGCTATAAATAAAGTGCTGTTAGTTTTGGAATAACGATGAGTAAAGTCCTGTCATGGATGCATTGCTGGGTAGCATACAAAACAAAATGGTAATGTTCCCTCACAGATTATCTGCTTGTTAGGTGTGACATCACgcgaagcagcttccgggtccaagcgctctatcaaactctATGGGGTGACTCgacaattgttattattatgtttacaaagcgatgtaatacttttgaaaatcacgttcgct

Function

GO:

id name namespace
GO:0048468 cell development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030182 neuron differentiation biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specific molecular_function
GO:0003677 DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040712-4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell development; neuron differentiation; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in ectoderm; nervous system; otic vesicle; presumptive diencephalon; and presumptive rhombomere 1. Orthologous to human IRX4 (iroquois homeobox 4).

Ensembl:

ensembl_id ENSDART00000052338

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029917 lncRNA upstream 139927 27974665 ~ 27976483 (+) True XLOC_014104
TCONS_00028103 lncRNA upstream 224355 27887318 ~ 27892055 (+) True XLOC_014102
TCONS_00028095 lncRNA upstream 761544 27354345 ~ 27354866 (+) True XLOC_014098
TCONS_00029916 lncRNA upstream 1074882 27033873 ~ 27041528 (+) True XLOC_014097
TCONS_00028060 lncRNA upstream 2963833 25151416 ~ 25152577 (+) True XLOC_014079
TCONS_00028119 lncRNA downstream 526071 28788968 ~ 28824390 (+) False XLOC_014109
TCONS_00029923 lncRNA downstream 527813 28790710 ~ 28824390 (+) False XLOC_014109
TCONS_00029925 lncRNA downstream 527813 28790710 ~ 28824390 (+) False XLOC_014109
TCONS_00029927 lncRNA downstream 527813 28790710 ~ 28824390 (+) False XLOC_014109
TCONS_00029926 lncRNA downstream 527813 28790710 ~ 28824390 (+) False XLOC_014109
TCONS_00028104 mRNA upstream 142259 27970292 ~ 27974151 (+) False XLOC_014103
TCONS_00028105 mRNA upstream 143589 27970383 ~ 27972821 (+) True XLOC_014103
TCONS_00028101 mRNA upstream 213901 27858866 ~ 27902509 (+) False XLOC_014102
TCONS_00028102 mRNA upstream 214400 27859546 ~ 27902010 (+) False XLOC_014102
TCONS_00028100 mRNA upstream 507861 27589201 ~ 27608549 (+) True XLOC_014101
TCONS_00028112 mRNA downstream 21223 28284120 ~ 28290213 (+) True XLOC_014107
TCONS_00028113 mRNA downstream 28165 28291062 ~ 28333840 (+) False XLOC_014108
TCONS_00028115 mRNA downstream 28479 28291376 ~ 28320139 (+) False XLOC_014108
TCONS_00028116 mRNA downstream 28543 28291440 ~ 28334155 (+) False XLOC_014108
TCONS_00028124 mRNA downstream 1040950 29303847 ~ 29333867 (+) True XLOC_014112
TCONS_00028091 other upstream 1184977 26928624 ~ 26931433 (+) True XLOC_014095
TCONS_00028082 other upstream 1310528 26805766 ~ 26805882 (+) True XLOC_014093
TCONS_00028077 other upstream 1539702 26576594 ~ 26576708 (+) True XLOC_014090
TCONS_00028073 other upstream 1923474 26192822 ~ 26192936 (+) True XLOC_014087
TCONS_00028068 other upstream 2604848 25508793 ~ 25511562 (+) True XLOC_014083
TCONS_00028114 other downstream 28479 28291376 ~ 28315953 (+) False XLOC_014108
TCONS_00028117 other downstream 58782 28321679 ~ 28331097 (+) False XLOC_014108
TCONS_00028118 other downstream 68330 28331227 ~ 28334164 (+) True XLOC_014108
TCONS_00028122 other downstream 940245 29203142 ~ 29203257 (+) True XLOC_014111
TCONS_00028123 other downstream 1040950 29303847 ~ 29320883 (+) False XLOC_014112

Expression Profile

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