RNA id: TU127074


Basic Information

Item Value
RNA id TU127074
length 723
lncRNA type read_through
GC content 0.45
exon number 3
gene id G111404
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9284520 ~ 9285599 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTTTTTTCTTCTTTAACTCTTTATTCTCCTCGTTCTTCTTTACCTCTTTATTCGCCTCGTTcttcttccccttctcctcctctttattttctttctctttcttcttccCCTTTTgcgttttttttgttgtcttttcctcccctttcttcttctcctctttctctgctgACTCCTCTTCGTCTTtcgtcttcttctcctctttcttcgcttcctcctctttcttcttcttctctgctttctttgctgcctcttcctcctctttctttgcttcctcttcctccttctctgctttctttgctgcctcttcctcctctttcttcttcgcTTTCCTTGCtgcttcttcctcctctttcttcttcttctctgctttCTTTGCtgcctcttcttcctctttcttcttcttctctgctttctttgctgcctctttctcttctttcttcttcttcactGCCTCTTTCTTTGCTGCTTCTTccccttctttcttcttcttcttctctgctttCTTTGCtgcttcttcctcctctttcTTCTTCTCTGCTTTCTTTGCtgcttcttcctcctctttcttcttctctgcttTCTTTGCtgcttcttcctcctctttcttctcccccctttcctctgcctctttcttctcctcccccttGGCCTGCTCTAACTTTTCCTCCTTTGTTCCAGCCTCTGCCTTCTCTTTCCTGTCCTTCTCCGCCTTCTCGACCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127095 lncRNA upstream 6163 9277532 ~ 9278357 (+) True G111417
TU127092 lncRNA upstream 7673 9276011 ~ 9276847 (+) True G111414
TU127079 lncRNA upstream 36887 9245445 ~ 9247633 (+) True G111405
TU127112 lncRNA upstream 48962 9235349 ~ 9235558 (+) True G111433
TU127100 lncRNA upstream 60615 9218727 ~ 9223905 (+) True G111422
TU127125 lncRNA downstream 22627 9308226 ~ 9308477 (+) True G111446
TU127133 lncRNA downstream 37271 9322870 ~ 9324339 (+) True G111451
TU127155 lncRNA downstream 43509 9329108 ~ 9330101 (+) False G111454
TU127156 lncRNA downstream 43509 9329108 ~ 9329723 (+) False G111454
TU127153 lncRNA downstream 43577 9329176 ~ 9330101 (+) False G111454
XM_036937288.1 mRNA upstream 40908 9239896 ~ 9243612 (+) False LOC110535231
XM_036937290.1 mRNA upstream 40908 9239950 ~ 9243612 (+) True LOC110535231
XM_021620097.2 mRNA upstream 56220 9221418 ~ 9228300 (+) False LOC110535224
XM_036937281.1 mRNA upstream 69380 9212074 ~ 9215140 (+) False LOC118937651
XM_036937271.1 mRNA upstream 95317 9175670 ~ 9189203 (+) True LOC110535199
XM_021598151.2 mRNA downstream 24385 9309984 ~ 9315691 (+) True LOC110520731
XM_036961592.1 mRNA downstream 69423 9355022 ~ 9358422 (+) True LOC118944051
XM_036937367.1 mRNA downstream 159591 9445190 ~ 9482500 (+) False LOC110519250
XM_036937369.1 mRNA downstream 159591 9445190 ~ 9482500 (+) False LOC110519250
XM_036937372.1 mRNA downstream 159591 9445190 ~ 9482500 (+) False LOC110519250
TU127103 other upstream 55495 9221485 ~ 9229025 (+) True LOC110535224
TU126891 other upstream 246619 9036804 ~ 9037901 (+) False LOC110518388
TU126159 other upstream 1180600 8073366 ~ 8103920 (+) True G110674
TU126124 other upstream 1349383 7898596 ~ 7935137 (+) True G110644
TU125754 other upstream 1578031 7701982 ~ 7706489 (+) True creb5b
TU127136 other downstream 44670 9330269 ~ 9331616 (+) False G111453
TU127140 other downstream 44670 9330269 ~ 9331616 (+) False G111453
TU127143 other downstream 44670 9330269 ~ 9331616 (+) False G111453
TU127145 other downstream 44670 9330269 ~ 9331616 (+) False G111453
TU127146 other downstream 44670 9330269 ~ 9331616 (+) False G111453

Expression Profile