RNA id: TU127153


Basic Information

Item Value
RNA id TU127153
length 926
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G111454
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9329108 ~ 9330101 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAAACAttgaattgaaatactgtagaattccattcattcctatggaggactgctcccaCTGGGGAGAGCCAATatggtggcttcaaagcctctcaatggccaataggaGAGGGTCAGCAATCCAGGGCTTAGATACATTATTAGTGCATACACTGATGTCAGTGATATAGTAGACTTTTCCTTGGTACCAGAATATTACCTTACATTATAGGCTATTCAATCAATTACAGACTCTCCCCCCAGAACCAATAGAACATATTTCAGGACAATAGTGAATTTGATTTTAAAATCTCAATCTGCACATGAACAGCTGAAATCACTCATAGAACAGAATACAACATATCCTGTTATCAATACCGTAGTGGAAATCAATAATAATATATCCTGGTATCAACGCAGTAGTGGAAATCAATAATAATATATCCTGGTATCAACGCAGTAGGAAGGTGGCGATAGGTCACCATGCAACAATGCTCAGTGTGTAATACTGTTGTGTGGGAAACATTTTTGGGCTTTTTTCCTTGAGACAAATAAAATGCGAAGTAACCCAATTAATTACCCCTTCTTGAACTTGAACACCAAAGTACTCATTCTCACTTAAATCTGTTTGCAAGGTCCAAACTGTTTTATATTTTACAAATTCCATGGCATTAGTGCCAGTGAATTTAAGCTtcagtggcgcagtggtctaaggcactgcctctcagtgctagaggtgtcactacagaccctggtttgatcccgggctgtatcacaaccggccgtgatcgggagtcccatagggtggcgcacaattggcactgcgtcatccgggttaggggagggtttggctggggtaggacgtcattgcaaataagaatttgttcttaactgcctagcctagttaaataaaggttaaataaaatagaaaaCATTTGTTGTTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127133 lncRNA upstream 4837 9322870 ~ 9324339 (+) True G111451
TU127125 lncRNA upstream 20699 9308226 ~ 9308477 (+) True G111446
TU127074 lncRNA upstream 43577 9284520 ~ 9285599 (+) False G111404
TU127139 lncRNA downstream 168 9330269 ~ 9331616 (+) False G111453
TU127144 lncRNA downstream 168 9330269 ~ 9331616 (+) False G111453
TU127149 lncRNA downstream 168 9330269 ~ 9331616 (+) False G111453
TU127163 lncRNA downstream 19678 9349779 ~ 9350032 (+) True G111460
TU127183 lncRNA downstream 61663 9391764 ~ 9392169 (+) True G111477
XM_021598151.2 mRNA upstream 13485 9309984 ~ 9315691 (+) True LOC110520731
XM_036937288.1 mRNA upstream 85564 9239896 ~ 9243612 (+) False LOC110535231
XM_036937290.1 mRNA upstream 85564 9239950 ~ 9243612 (+) True LOC110535231
XM_021620097.2 mRNA upstream 100876 9221418 ~ 9228300 (+) False LOC110535224
XM_036937281.1 mRNA upstream 114036 9212074 ~ 9215140 (+) False LOC118937651
XM_036961592.1 mRNA downstream 24921 9355022 ~ 9358422 (+) True LOC118944051
XM_036937367.1 mRNA downstream 115089 9445190 ~ 9482500 (+) False LOC110519250
XM_036937369.1 mRNA downstream 115089 9445190 ~ 9482500 (+) False LOC110519250
XM_036937372.1 mRNA downstream 115089 9445190 ~ 9482500 (+) False LOC110519250
XM_036937374.1 mRNA downstream 115090 9445191 ~ 9482500 (+) False LOC110519250
TU127103 other upstream 100151 9221485 ~ 9229025 (+) True LOC110535224
TU126891 other upstream 291275 9036804 ~ 9037901 (+) False LOC110518388
TU126159 other upstream 1225256 8073366 ~ 8103920 (+) True G110674
TU126124 other upstream 1394039 7898596 ~ 7935137 (+) True G110644
TU125754 other upstream 1622687 7701982 ~ 7706489 (+) True creb5b
TU127136 other downstream 168 9330269 ~ 9331616 (+) False G111453
TU127140 other downstream 168 9330269 ~ 9331616 (+) False G111453
TU127143 other downstream 168 9330269 ~ 9331616 (+) False G111453
TU127145 other downstream 168 9330269 ~ 9331616 (+) False G111453
TU127146 other downstream 168 9330269 ~ 9331616 (+) False G111453

Expression Profile