RNA id: TU127553


Basic Information

Item Value
RNA id TU127553
length 290
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G111778
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9427243 ~ 9427965 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCCTATTATATCATTCTTTAcccaaaataaaacaatagagccATTCCTCCCCTATTATATCATTCTttaccaaaataaaacaatagagccATTCCTCCCCTATTATATCATTCTttaccaaaataaaacaatagagccATTCCCCCCCTATTATATCATACTttaccaaaataaaacaatagagccCCCCCCCCTATTATATCATACTttaccaaaataaaacaatagagccATTCCTCCCCTATTATATCATACTttaccaaaataaaacaatagagccATTCCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127183 lncRNA upstream 35074 9391764 ~ 9392169 (+) True G111477
TU127163 lncRNA upstream 77211 9349779 ~ 9350032 (+) True G111460
TU127139 lncRNA upstream 95627 9330269 ~ 9331616 (+) False G111453
TU127144 lncRNA upstream 95627 9330269 ~ 9331616 (+) False G111453
TU127149 lncRNA upstream 95627 9330269 ~ 9331616 (+) False G111453
TU127562 lncRNA downstream 8635 9436600 ~ 9436829 (+) True G111785
TU127563 lncRNA downstream 10672 9438637 ~ 9439444 (+) True G111786
TU127585 lncRNA downstream 17268 9445233 ~ 9446565 (+) True LOC110519250
TU127636 lncRNA downstream 173794 9601759 ~ 9602403 (+) True G111840
TU127755 lncRNA downstream 192147 9620112 ~ 9620393 (+) True G111937
XM_036961592.1 mRNA upstream 68821 9355022 ~ 9358422 (+) True LOC118944051
XM_021598151.2 mRNA upstream 111552 9309984 ~ 9315691 (+) True LOC110520731
XM_036937288.1 mRNA upstream 183631 9239896 ~ 9243612 (+) False LOC110535231
XM_036937290.1 mRNA upstream 183631 9239950 ~ 9243612 (+) True LOC110535231
XM_021620097.2 mRNA upstream 198943 9221418 ~ 9228300 (+) False LOC110535224
XM_036937367.1 mRNA downstream 17225 9445190 ~ 9482500 (+) False LOC110519250
XM_036937369.1 mRNA downstream 17225 9445190 ~ 9482500 (+) False LOC110519250
XM_036937372.1 mRNA downstream 17225 9445190 ~ 9482500 (+) False LOC110519250
XM_036937374.1 mRNA downstream 17226 9445191 ~ 9482500 (+) False LOC110519250
XM_036937376.1 mRNA downstream 17226 9445191 ~ 9482500 (+) False LOC110519250
TU127147 other upstream 95627 9330269 ~ 9331616 (+) False G111453
TU127567 other downstream 12344 9440309 ~ 9444041 (+) False G111788
TU127568 other downstream 12344 9440309 ~ 9444041 (+) False G111788
TU127569 other downstream 12344 9440309 ~ 9441766 (+) True G111788
TU127811 other downstream 274075 9702040 ~ 9723871 (+) False LOC110506952
TU127846 other downstream 346238 9774203 ~ 9776451 (+) True LOC118937659

Expression Profile