RNA id: TU127653


Basic Information

Item Value
RNA id TU127653
length 1366
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G111856
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9440011 ~ 9441692 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtatccccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtactggtatccccctgtatatagcctccacattgactctgtactggtatccccctgtatatagcctccacattgtctctgtaccggtaccccctgtatatagcctccacattgactctgtactggtatccccctgtatatatcctccacattgactctgtaccggtaccccctgtatatatcctccacattgactctgtactggtatccccctgtatatagcctccacattgactctgtaccggtatcccctgtatatagcctccacattgactctgtacctttaccccctgtatatagcctccacattgactctgtactggtatcccctgtatatagcctccacattgtctctgtaccggtaccccctgtatatagcctccacattgactctgtactggtatccccctgtatatagcctccacattgactctgtactggtatccccctgtatatagcctccacattgactctgtaccggtatccccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtactggtatccccctgtatatagcctccacattgactctgtactggtatccccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtactggtatccccctgtatatagcctccacattgactctgtactggtatccccctgtatatagcctccacattgactctgtaccagtaccccctgtatatagcctccacattgactctgtacctttaccccctgtatatagcctccacattgactctgtactggtatccccctgtatatagcctccacattgactctgtactggtatccccctgtatatagcctccacattgactctgtaccggtatccccctgtatatagcctccacattgactctgtaccggtatccccctgtatatagcctccacattgactctgtactggtatccccctgtatatagcctccacattgactctgtactggtatccccctgtatatagcctccacattgactctgtactggtatccccctgtatatagcctccacattgactctgtactggtatccccctgtatatagcctccacattgactctgtactggtatccccctgtatatagcctccacattgactctgtactggtatccccctgtatatagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127561 lncRNA downstream 9469 9430332 ~ 9430542 (-) True G111784
TU127559 lncRNA downstream 10329 9429386 ~ 9429682 (-) True G111782
TU127558 lncRNA downstream 10657 9429142 ~ 9429354 (-) True G111781
TU127557 lncRNA downstream 11348 9428441 ~ 9428663 (-) True G111780
TU127550 lncRNA downstream 14492 9425233 ~ 9425519 (-) True G111777
TU127678 lncRNA upstream 37988 9479680 ~ 9482451 (-) False G111880
TU127679 lncRNA upstream 37988 9479680 ~ 9482451 (-) False G111880
TU127680 lncRNA upstream 37988 9479680 ~ 9482451 (-) False G111880
TU127681 lncRNA upstream 37988 9479680 ~ 9482451 (-) False G111880
TU127683 lncRNA upstream 37988 9479680 ~ 9482451 (-) False G111880
XM_036937361.1 mRNA downstream 36518 9392946 ~ 9403493 (-) True LOC110512181
XM_036937351.1 mRNA downstream 90706 9330271 ~ 9349305 (-) True LOC110520732
XM_036937356.1 mRNA downstream 111249 9322760 ~ 9328762 (-) True LOC118937655
XM_036937349.1 mRNA downstream 118357 9315853 ~ 9321654 (-) True LOC110506813
XM_036961584.1 mRNA downstream 137596 9284288 ~ 9302415 (-) True LOC118944050
XR_005034948.1 mRNA upstream 404838 9846530 ~ 9846857 (-) False LOC118937662
XM_036937466.1 mRNA upstream 468778 9910470 ~ 9913331 (-) False LOC110507310
XM_036937467.1 mRNA upstream 468778 9910470 ~ 9913331 (-) True LOC110507310
XM_021568587.2 mRNA upstream 559044 10000736 ~ 10006810 (-) False LOC110493960
XM_021568588.2 mRNA upstream 559044 10000736 ~ 10006810 (-) False LOC110493960
TU127651 other downstream 73 9439362 ~ 9439938 (-) True G111855
TU127380 other downstream 371949 9067612 ~ 9068062 (-) True G111659
TU127371 other downstream 389213 9050289 ~ 9050798 (-) True G111650
TU127230 other downstream 667191 8771536 ~ 8772820 (-) True LOC110519098
TU127197 other downstream 703613 8705304 ~ 8736398 (-) True LOC110535184
TU127773 other upstream 192845 9634537 ~ 9635130 (-) True G111955
TU127893 other upstream 319608 9761300 ~ 9761665 (-) True G112066
TU127903 other upstream 337319 9779011 ~ 9780455 (-) True G112076
TU128303 other upstream 559038 10000730 ~ 10003643 (-) False LOC110493960
TU128304 other upstream 559038 10000730 ~ 10003497 (-) False LOC110493960

Expression Profile