RNA id: TU127569


Basic Information

Item Value
RNA id TU127569
length 706
RNA type TUCP
GC content 0.48
exon number 3
gene id G111788
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9440309 ~ 9444041 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccggtacagagtcaatgtggaggctatatacagggggataccagtacagagtcaatgtggaggctatatacagggggataccagtacagagtcaatgtggaggctatatacagggggtaaaggtacagagtcaatgtggaggctatatacagggggtactggtacagagtcaatgtggaggctatatacagggggtaccggtacagagtcaatgtggaggctatatacaggggataccagtacagagtcaatgtggaggctatatacagggggtaaaggtacagagtcaatgtggaggctatatacaggggataccggtacagagtcaatgtggaggctatatacagggggataccagtacagagtcaatgtggaggatatatacagggggtaccggtacagagtcaatgtggaggatatatacagggggataccagtacagagtcaatgtggaggctatatacagggggtaccggtacagagacaatgtggaggctatatacagggggataccagtacagagtcaatgtggaggctatatacagggggataccagtacagagtcaatgtggaggctatatacagggggtaccggtacagagtcaatgtggaggctatatacagggggataccagtacagagtcaatgtggaggctatatacagggggataccggtacagagtcaatgtggaggctatatacaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127563 lncRNA upstream 865 9438637 ~ 9439444 (+) True G111786
TU127562 lncRNA upstream 3480 9436600 ~ 9436829 (+) True G111785
TU127553 lncRNA upstream 12344 9427243 ~ 9427965 (+) True G111778
TU127183 lncRNA upstream 48140 9391764 ~ 9392169 (+) True G111477
TU127163 lncRNA upstream 90277 9349779 ~ 9350032 (+) True G111460
TU127585 lncRNA downstream 3467 9445233 ~ 9446565 (+) True LOC110519250
TU127636 lncRNA downstream 159993 9601759 ~ 9602403 (+) True G111840
TU127755 lncRNA downstream 178346 9620112 ~ 9620393 (+) True G111937
TU127772 lncRNA downstream 192777 9634543 ~ 9634819 (+) True G111954
TU127774 lncRNA downstream 194359 9636125 ~ 9637610 (+) True G111956
XM_036961592.1 mRNA upstream 81887 9355022 ~ 9358422 (+) True LOC118944051
XM_021598151.2 mRNA upstream 124618 9309984 ~ 9315691 (+) True LOC110520731
XM_036937288.1 mRNA upstream 196697 9239896 ~ 9243612 (+) False LOC110535231
XM_036937290.1 mRNA upstream 196697 9239950 ~ 9243612 (+) True LOC110535231
XM_021620097.2 mRNA upstream 212009 9221418 ~ 9228300 (+) False LOC110535224
XM_036937367.1 mRNA downstream 3424 9445190 ~ 9482500 (+) False LOC110519250
XM_036937369.1 mRNA downstream 3424 9445190 ~ 9482500 (+) False LOC110519250
XM_036937372.1 mRNA downstream 3424 9445190 ~ 9482500 (+) False LOC110519250
XM_036937374.1 mRNA downstream 3425 9445191 ~ 9482500 (+) False LOC110519250
XM_036937376.1 mRNA downstream 3425 9445191 ~ 9482500 (+) False LOC110519250
TU127147 other upstream 108693 9330269 ~ 9331616 (+) False G111453
TU127811 other downstream 260274 9702040 ~ 9723871 (+) False LOC110506952
TU127846 other downstream 332437 9774203 ~ 9776451 (+) True LOC118937659
TU128663 other downstream 1369752 10811518 ~ 10826063 (+) False G112697
TU129356 other downstream 1798966 11240732 ~ 11243069 (+) False fbxo32
TU129360 other downstream 1819788 11261554 ~ 11273000 (+) False elovl4a

Expression Profile