Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00028113 |
| length | 2027 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 15 |
| gene id | XLOC_014108 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007130.7 |
| NCBI id | CM002903.2 |
| chromosome length | 48449771 |
| location | 28291062 ~ 28334164 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006629 | lipid metabolic process | biological_process |
| GO:0008654 | phospholipid biosynthetic process | biological_process |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0005789 | endoplasmic reticulum membrane | cellular_component |
| GO:0005794 | Golgi apparatus | cellular_component |
| GO:0005811 | lipid droplet | cellular_component |
| GO:0000139 | Golgi membrane | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0005509 | calcium ion binding | molecular_function |
| GO:0016746 | transferase activity, transferring acyl groups | molecular_function |
| GO:0047159 | 1-alkenylglycerophosphocholine O-acyltransferase activity | molecular_function |
| GO:0047184 | 1-acylglycerophosphocholine O-acyltransferase activity | molecular_function |
| GO:0047192 | 1-alkylglycerophosphocholine O-acetyltransferase activity | molecular_function |
| GO:0003841 | 1-acylglycerol-3-phosphate O-acyltransferase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-060503-915 | Predicted to enable O-acyltransferase activity. Predicted to be involved in phospholipid biosynthetic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Orthologous to human LPCAT1 (lysophosphatidylcholine acyltransferase 1). |
| ensembl_id | ENSDART00000163382 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00029919 | lncRNA | upstream | 95620 | 28115805 ~ 28195442 (+) | False | XLOC_014105 |
| TCONS_00029918 | lncRNA | upstream | 103379 | 28114514 ~ 28187683 (+) | False | XLOC_014105 |
| TCONS_00029920 | lncRNA | upstream | 103379 | 28115901 ~ 28187683 (+) | False | XLOC_014105 |
| TCONS_00029921 | lncRNA | upstream | 172453 | 28115922 ~ 28118609 (+) | False | XLOC_014105 |
| TCONS_00029917 | lncRNA | upstream | 314579 | 27974665 ~ 27976483 (+) | True | XLOC_014104 |
| TCONS_00028119 | lncRNA | downstream | 455128 | 28788968 ~ 28824390 (+) | False | XLOC_014109 |
| TCONS_00029923 | lncRNA | downstream | 456870 | 28790710 ~ 28824390 (+) | False | XLOC_014109 |
| TCONS_00029925 | lncRNA | downstream | 456870 | 28790710 ~ 28824390 (+) | False | XLOC_014109 |
| TCONS_00029927 | lncRNA | downstream | 456870 | 28790710 ~ 28824390 (+) | False | XLOC_014109 |
| TCONS_00029926 | lncRNA | downstream | 456870 | 28790710 ~ 28824390 (+) | False | XLOC_014109 |
| TCONS_00028112 | mRNA | upstream | 849 | 28284120 ~ 28290213 (+) | True | XLOC_014107 |
| TCONS_00028106 | mRNA | upstream | 28165 | 28114503 ~ 28262897 (+) | False | XLOC_014105 |
| TCONS_00028107 | mRNA | upstream | 28165 | 28115801 ~ 28262897 (+) | False | XLOC_014105 |
| TCONS_00028108 | mRNA | upstream | 28165 | 28116410 ~ 28262897 (+) | False | XLOC_014105 |
| TCONS_00028110 | mRNA | upstream | 28165 | 28187480 ~ 28262897 (+) | False | XLOC_014105 |
| TCONS_00028124 | mRNA | downstream | 970007 | 29303847 ~ 29333867 (+) | True | XLOC_014112 |
| TCONS_00028125 | mRNA | downstream | 1003949 | 29337789 ~ 29363779 (+) | True | XLOC_014113 |
| TCONS_00028126 | mRNA | downstream | 1464224 | 29798064 ~ 29800205 (+) | False | XLOC_014116 |
| TCONS_00028127 | mRNA | downstream | 1464266 | 29798106 ~ 29800812 (+) | True | XLOC_014116 |
| TCONS_00028128 | mRNA | downstream | 1474631 | 29808471 ~ 29821601 (+) | False | XLOC_014117 |
| TCONS_00028109 | other | upstream | 147808 | 28143135 ~ 28143254 (+) | True | XLOC_014106 |
| TCONS_00028091 | other | upstream | 1359629 | 26928624 ~ 26931433 (+) | True | XLOC_014095 |
| TCONS_00028082 | other | upstream | 1485180 | 26805766 ~ 26805882 (+) | True | XLOC_014093 |
| TCONS_00028077 | other | upstream | 1714354 | 26576594 ~ 26576708 (+) | True | XLOC_014090 |
| TCONS_00028073 | other | upstream | 2098126 | 26192822 ~ 26192936 (+) | True | XLOC_014087 |
| TCONS_00028122 | other | downstream | 869302 | 29203142 ~ 29203257 (+) | True | XLOC_014111 |
| TCONS_00028123 | other | downstream | 970007 | 29303847 ~ 29320883 (+) | False | XLOC_014112 |
| TCONS_00028134 | other | downstream | 1520409 | 29854249 ~ 29860206 (+) | False | XLOC_014118 |
| TCONS_00028136 | other | downstream | 1525196 | 29859036 ~ 29860334 (+) | True | XLOC_014118 |
| TCONS_00028142 | other | downstream | 2184615 | 30518455 ~ 30518573 (+) | True | XLOC_014123 |
