RNA id: TU127689


Basic Information

Item Value
RNA id TU127689
length 2414
lncRNA type antisense_over
GC content 0.44
exon number 3
gene id G111880
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9479680 ~ 9482483 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCAACGTCATAGGCCTGTTTCCGTTTCAAATGGACACAGTGTGCATACATGATACTTTTCCCATGTCCATTATTGAAAGATGTCACATTAAAATATTACATTAACAAAGAATGGTCCAAGAGAACAGCCATCATCCCCAGTAACCCTTCAACACCCCAGACACCGACAGACACACAGGTCCAATCCAGCTGTACTTTAGGACCAGGACTTTTACCCAATGTAGGCAATACATTAAATAGTGCCTATACTGCACTTTACCACAGTAAAACATCTCTATCCATCAGTAACACAACAAATACATGTGGATGTGTCATTCACTGTGTACAATGACAGACTGATTAAGTAGTGCAACGTAAAACCTCGACAGGAATGTCATCTCTTAAGACCTCATAACCTGTTATAATCAGTACCCTAATCTAATCACATGAAACGGACAGGAGTGGAAAAGTGAAGTGCATCTTTTAAGAGAAAGATTGAGAGAAGACTAGGACCAATGTGAAAAGAAAGAGAAGGTTATTGCGTCCATCTTAATGCAGCTACCCAGTAAAACTATTATTTGTAGatatgggttcaaatactatttgaaatcatttcaagtACATTAGGTGTTCTTAATTCTGATTGCCTGCTGGCACAATGGATCCAATAGAAAAGCGCTGGCTAAACTGCAAACCCTGCCCCTCTGGCAGGTTAAAGTAAACCACACTACttttgaaataaatcaaatagtaTTTAAATCCAGGTCTGATTATTTGGCACGGTGGCAACTCCACGGGAGTGCCTGGTTGCGTACATGTTGTACCTGGGGTAAAGAAGAACAGATAAAGACTAGGGGtcacattcattaggcaccaaacggaagaaaactgactgaaaacagggagggactatctGGACTAACTTCCCATATTCATTTTCCGTTGCGTGGTCCTAATGAAAGTGACCCAGGCGTTTTCCCTAACCTGACAAGTAGAAACTCTGGGCCCTCAATGTATAACTAGGGCCTGTTTTCACCCCTGGTGAGGTCTCGTGGTCAGGAGAAAACTCCTGTTCCTACAAGACCTTTTCTGAACTAGCTACAATAGTGTTTCAGGATGCAGTTCTGTTGTTAAACAATGCTAGCACGAGAATAAATGGAGCCTCTGAAATCCCTTCTGCCTCAGAAGTAAGTGTAAGAACAGGTACATGGGATGGTTTTGGGCTGTCCTCGCTGACAGACAGCCTCCTTGGACGTGGATGATAACTGCTCATCCCTGAGTGGAGGGCTGTGGACGGTCATGGAGCTTTGTAGGACGGCAATTTGGTCAGCCAAATGACTGCGGTCACCGTAACAACCGTTCAAATAGAAAAGGAAATACAAATGAATAAATGTAGACGCACATTTCTCCTCCGttcctgactgcatgtgctgccatagaaacagaatgaatagaacgggAGTCCCCGTTCAACTCAACGTTGGCTTAATGGGTGGACTAGCAGCCATTGCGAGTCTACCCATAGGaccaaagcaggaagtaaaatatGTGCTGTGATTTGGTGATTCAACTCAATAGACATTACAAAAAGTGCAgtacattccattgcatgagccacaccagttaacatcatttgaatgaacattctacataaCAACAAAGATAAATCATGTTAAGAGTCCATGTTGCAGAAGAAAGGGACTTAACTGCACACATTCATTTTTTACGGTAATGGAGGTTATTCTTtacggtcttcatccataaccgtgGGTTACAGGGTAATAGTGCCAGCCCTACGTGTGTTTCAGGGGTTGGTCCACTACACTAGTGTGAATGGAGTGGAGGCTGGAGATCAACCCCTAGCCCCTCCCCACAAGCCCCTTTTCCTGACCTGAAAGGGACAGACCGCTATAACCAATATGGTGGAGATTCCATCCAGCAGGCAAATCCCATCAGGAGGCCAAGGAAGTAACTACCATATTGCCTACTCCGTTCTATTCCCTTCAGGTCTACAGGAGTGCCTAGGGAAGAGGGGATAGGGCTCCATTTGGAATTCAGCTAAACACTAAGCTCAGCGGAGGTCAAGCCCATTGGCCAAttgacctaaccctaacacactcAACATTCTAGAAGACAAATTCAAAAAGTGTCAGATTTCATAATACTGCTCCAAAGTGCTATGCATGTTTTTCTATACATGGAGGTACAGTCTTTGGTCACTAATACATACGTTCATGGACTAATTCAAGTTGCACTGTCAACATGTGAAGTACCAGATCATCTTTGTAGAAAACAGTAACATGAACAACTCTAAAACAGCTAATGAAGTAATGATTGGCAGGCAGGATGTGTGTCTGTTCAATGGAAGTGGCCCATAGCTTCAGCTGCCTTGACTCTCACCACTGGGTCTGGGTCCTGGAGCAGCATGACCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127653 lncRNA downstream 37988 9440011 ~ 9441692 (-) True G111856
TU127561 lncRNA downstream 49138 9430332 ~ 9430542 (-) True G111784
TU127559 lncRNA downstream 49998 9429386 ~ 9429682 (-) True G111782
TU127558 lncRNA downstream 50326 9429142 ~ 9429354 (-) True G111781
TU127557 lncRNA downstream 51017 9428441 ~ 9428663 (-) True G111780
TU127709 lncRNA upstream 55653 9538104 ~ 9619546 (-) True G111897
TU127715 lncRNA upstream 63608 9546059 ~ 9562951 (-) False G111900
TU127719 lncRNA upstream 66211 9548662 ~ 9549380 (-) True G111902
TU127716 lncRNA upstream 79668 9562119 ~ 9562951 (-) False G111900
TU127717 lncRNA upstream 79668 9562119 ~ 9562951 (-) True G111900
XM_036937361.1 mRNA downstream 76187 9392946 ~ 9403493 (-) True LOC110512181
XM_036937351.1 mRNA downstream 130375 9330271 ~ 9349305 (-) True LOC110520732
XM_036937356.1 mRNA downstream 150918 9322760 ~ 9328762 (-) True LOC118937655
XM_036937349.1 mRNA downstream 158026 9315853 ~ 9321654 (-) True LOC110506813
XM_036961584.1 mRNA downstream 177265 9284288 ~ 9302415 (-) True LOC118944050
XR_005034948.1 mRNA upstream 364079 9846530 ~ 9846857 (-) False LOC118937662
XM_036937466.1 mRNA upstream 428019 9910470 ~ 9913331 (-) False LOC110507310
XM_036937467.1 mRNA upstream 428019 9910470 ~ 9913331 (-) True LOC110507310
XM_021568587.2 mRNA upstream 518285 10000736 ~ 10006810 (-) False LOC110493960
XM_021568588.2 mRNA upstream 518285 10000736 ~ 10006810 (-) False LOC110493960
TU127651 other downstream 39742 9439362 ~ 9439938 (-) True G111855
TU127380 other downstream 411618 9067612 ~ 9068062 (-) True G111659
TU127371 other downstream 428882 9050289 ~ 9050798 (-) True G111650
TU127230 other downstream 706860 8771536 ~ 8772820 (-) True LOC110519098
TU127197 other downstream 743282 8705304 ~ 8736398 (-) True LOC110535184
TU127773 other upstream 152086 9634537 ~ 9635130 (-) True G111955
TU127893 other upstream 278849 9761300 ~ 9761665 (-) True G112066
TU127903 other upstream 296560 9779011 ~ 9780455 (-) True G112076
TU128303 other upstream 518279 10000730 ~ 10003643 (-) False LOC110493960
TU128304 other upstream 518279 10000730 ~ 10003497 (-) False LOC110493960

Expression Profile