RNA id: TU127717


Basic Information

Item Value
RNA id TU127717
length 414
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G111900
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9546059 ~ 9562951 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgcgtgtgcgtgtgcgtgcgtgtgtgtgtgcgcaccgtCTGTGTTTGTAATATTctgttgttcaaatcaaatcaaatgttatttgtcacatgcgccgaatacatcaggtgtagtagaccttacagtgaaatgctgaatacatcaggtgtagtagaccttacagtcaaatgctgaatacatcaggtgtagtagaccttacagtgaaatgctgaatacatcaggtgtagtagaccttacagtgaaatgctgaatacatcaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacatcaggtgtagtagaccttacagtgaaatgctgaatacatcaggtgtagtagaccttacagtgaaatgctgactaacaAGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127719 lncRNA downstream 12739 9548662 ~ 9549380 (-) True G111902
TU127687 lncRNA downstream 79668 9479680 ~ 9482451 (-) False G111880
TU127762 lncRNA upstream 60038 9622989 ~ 9623266 (-) True G111944
TU127770 lncRNA upstream 68036 9630987 ~ 9631217 (-) True G111952
TU127779 lncRNA upstream 79667 9642618 ~ 9642863 (-) True G111961
TU127780 lncRNA upstream 80074 9643025 ~ 9643234 (-) True G111962
TU127781 lncRNA upstream 80752 9643703 ~ 9644043 (-) True G111963
XM_036937361.1 mRNA downstream 158626 9392946 ~ 9403493 (-) True LOC110512181
XM_036937351.1 mRNA downstream 212814 9330271 ~ 9349305 (-) True LOC110520732
XM_036937356.1 mRNA downstream 233357 9322760 ~ 9328762 (-) True LOC118937655
XM_036937349.1 mRNA downstream 240465 9315853 ~ 9321654 (-) True LOC110506813
XM_036961584.1 mRNA downstream 259704 9284288 ~ 9302415 (-) True LOC118944050
XR_005034948.1 mRNA upstream 283579 9846530 ~ 9846857 (-) False LOC118937662
XM_036937466.1 mRNA upstream 347519 9910470 ~ 9913331 (-) False LOC110507310
XM_036937467.1 mRNA upstream 347519 9910470 ~ 9913331 (-) True LOC110507310
XM_021568587.2 mRNA upstream 437785 10000736 ~ 10006810 (-) False LOC110493960
XM_021568588.2 mRNA upstream 437785 10000736 ~ 10006810 (-) False LOC110493960
TU127651 other downstream 122181 9439362 ~ 9439938 (-) True G111855
TU127380 other downstream 494057 9067612 ~ 9068062 (-) True G111659
TU127371 other downstream 511321 9050289 ~ 9050798 (-) True G111650
TU127230 other downstream 789299 8771536 ~ 8772820 (-) True LOC110519098
TU127197 other downstream 825721 8705304 ~ 8736398 (-) True LOC110535184
TU127773 other upstream 71586 9634537 ~ 9635130 (-) True G111955
TU127893 other upstream 198349 9761300 ~ 9761665 (-) True G112066
TU127903 other upstream 216060 9779011 ~ 9780455 (-) True G112076
TU128303 other upstream 437779 10000730 ~ 10003643 (-) False LOC110493960
TU128304 other upstream 437779 10000730 ~ 10003497 (-) False LOC110493960

Expression Profile