RNA id: TU127833


Basic Information

Item Value
RNA id TU127833
length 210
lncRNA type intronic
GC content 0.42
exon number 1
gene id G112008
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9725171 ~ 9725380 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGTCTAGAGAGTTTGTGTCACCTGGGTTCTACACTGACATTTGACTACTAATAAAGGGCTTAATGAGATTTCTGACTCGCCTCCATGGAAATGGCAACTGTGACCTAATTTTTCATAGGCGGCGATGCTGAGTGTTTGTATATGTACCCTTAATGGAAACCGTTTTCCTGTTGGTGAAAATGTACACAtaaacattaacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127823 lncRNA upstream 30494 9694367 ~ 9694677 (+) True G111998
TU127808 lncRNA upstream 39893 9684809 ~ 9685278 (+) True G111990
TU127796 lncRNA upstream 47794 9677177 ~ 9677377 (+) True G111978
TU127786 lncRNA upstream 70815 9654052 ~ 9654356 (+) True G111968
TU127774 lncRNA upstream 87561 9636125 ~ 9637610 (+) True G111956
TU127818 lncRNA downstream 183 9725563 ~ 9739707 (+) True LOC110506952
TU127836 lncRNA downstream 21979 9747359 ~ 9747559 (+) True LOC110520736
TU127838 lncRNA downstream 26724 9752104 ~ 9752340 (+) True G112013
TU127820 lncRNA downstream 58176 9783556 ~ 9784652 (+) True LOC110520735
TU127909 lncRNA downstream 64735 9790115 ~ 9790613 (+) True G112081
XM_021586764.2 mRNA upstream 173527 9548702 ~ 9551644 (+) True LOC110506885
XM_036937369.1 mRNA upstream 242671 9445190 ~ 9482500 (+) False LOC110519250
XM_036937390.1 mRNA downstream 19486 9744866 ~ 9757901 (+) False LOC110520736
XM_036937388.1 mRNA downstream 32948 9758328 ~ 9785173 (+) False LOC110520735
XM_036937389.1 mRNA downstream 39390 9764770 ~ 9785173 (+) False LOC110520735
XM_036937396.1 mRNA downstream 48194 9773574 ~ 9776807 (+) False LOC118937659
XM_036937399.1 mRNA downstream 95750 9821130 ~ 9845619 (+) False LOC110520749
TU127811 other upstream 1300 9702040 ~ 9723871 (+) False LOC110506952
TU127567 other upstream 281130 9440309 ~ 9444041 (+) False G111788
TU127568 other upstream 281130 9440309 ~ 9444041 (+) False G111788
TU127569 other upstream 283405 9440309 ~ 9441766 (+) True G111788
TU127150 other upstream 393555 9330269 ~ 9331616 (+) False G111453
TU127846 other downstream 48823 9774203 ~ 9776451 (+) True LOC118937659
TU128663 other downstream 1086138 10811518 ~ 10826063 (+) False G112697
TU129356 other downstream 1515352 11240732 ~ 11243069 (+) False fbxo32
TU129360 other downstream 1536174 11261554 ~ 11273000 (+) False elovl4a
TU129361 other downstream 1536174 11261554 ~ 11272897 (+) True elovl4a

Expression Profile