RNA id: TU127910


Basic Information

Item Value
RNA id TU127910
length 275
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G112082
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9792609 ~ 9792883 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctgctgaccctgataacaattaaccacctgaccctgttaacaactaaccacctgaccctgttaacaactaaccacctgaccctgttaacaactaaccacctgaccctgttaacaactaacaacctgaccctgttaacaactaaccacctgaccctgttaacaactaaccacctgaccctgttaacaactaacaacctgacccggataacaactaacctgctgaccctgttaacaactaacaacctgaccctgttaacaactaaccacctgaccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127909 lncRNA upstream 1996 9790115 ~ 9790613 (+) True G112081
TU127820 lncRNA upstream 7957 9783556 ~ 9784652 (+) True LOC110520735
TU127838 lncRNA upstream 40269 9752104 ~ 9752340 (+) True G112013
TU127836 lncRNA upstream 45050 9747359 ~ 9747559 (+) True LOC110520736
TU127818 lncRNA upstream 52902 9725563 ~ 9739707 (+) True LOC110506952
TU127911 lncRNA downstream 8805 9801688 ~ 9805928 (+) True G112083
TU127912 lncRNA downstream 18702 9811585 ~ 9811944 (+) True G112084
TU127913 lncRNA downstream 21193 9814076 ~ 9814345 (+) True G112085
TU127908 lncRNA downstream 53188 9846071 ~ 9847210 (+) True G112080
TU127933 lncRNA downstream 55068 9847951 ~ 9885261 (+) True LOC110507293
XM_036937388.1 mRNA upstream 7436 9758328 ~ 9785173 (+) False LOC110520735
XM_036937389.1 mRNA upstream 7436 9764770 ~ 9785173 (+) False LOC110520735
XM_036937396.1 mRNA upstream 15802 9773574 ~ 9776807 (+) False LOC118937659
XM_036937390.1 mRNA upstream 34708 9744866 ~ 9757901 (+) False LOC110520736
XM_036937386.1 mRNA upstream 49886 9701990 ~ 9742723 (+) False LOC110506952
XM_036937399.1 mRNA downstream 28247 9821130 ~ 9845619 (+) False LOC110520749
XM_036937401.1 mRNA downstream 28248 9821131 ~ 9845619 (+) True LOC110520749
XM_036937413.1 mRNA downstream 56251 9849134 ~ 9983302 (+) False LOC110507293
XM_036937415.1 mRNA downstream 77099 9869982 ~ 9983302 (+) False LOC110507293
XM_036937418.1 mRNA downstream 77100 9869983 ~ 9983302 (+) False LOC110507293
TU127846 other upstream 16158 9774203 ~ 9776451 (+) True LOC118937659
TU127811 other upstream 68738 9702040 ~ 9723871 (+) False LOC110506952
TU127567 other upstream 348568 9440309 ~ 9444041 (+) False G111788
TU128663 other downstream 1018635 10811518 ~ 10826063 (+) False G112697
TU129356 other downstream 1447849 11240732 ~ 11243069 (+) False fbxo32
TU129360 other downstream 1468671 11261554 ~ 11273000 (+) False elovl4a
TU129361 other downstream 1468671 11261554 ~ 11272897 (+) True elovl4a
TU129492 other downstream 1622048 11414931 ~ 11415178 (+) True G113285

Expression Profile