RNA id: TU127911


Basic Information

Item Value
RNA id TU127911
length 351
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G112083
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9801688 ~ 9805928 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acctgaccctgttaacaactaacctgctgaccctgttaacaactaaccacctgaccctgataacaactaaccacctgaccctgttaacaactaaccacctgaccctgttaacaactaaccacctgaccctgttaacaactaacaacctgaccctgttaacaactaaccacctgaccctgttaacaactaaccacctgaccctgttaacaactaacaacctgaccctgttaacaactaacctgctgaccctgttaacaactaaccacctgaccctgataacaactaacctgctgaccctgttaacaactaacaacctgaccctgttaacaactaaccacctgaccctgataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127910 lncRNA upstream 8805 9792609 ~ 9792883 (+) True G112082
TU127909 lncRNA upstream 11075 9790115 ~ 9790613 (+) True G112081
TU127820 lncRNA upstream 17036 9783556 ~ 9784652 (+) True LOC110520735
TU127838 lncRNA upstream 49348 9752104 ~ 9752340 (+) True G112013
TU127836 lncRNA upstream 54129 9747359 ~ 9747559 (+) True LOC110520736
TU127912 lncRNA downstream 5657 9811585 ~ 9811944 (+) True G112084
TU127913 lncRNA downstream 8148 9814076 ~ 9814345 (+) True G112085
TU127908 lncRNA downstream 40143 9846071 ~ 9847210 (+) True G112080
TU127933 lncRNA downstream 42023 9847951 ~ 9885261 (+) True LOC110507293
TU127966 lncRNA downstream 88969 9894897 ~ 9895609 (+) True G112119
XM_036937388.1 mRNA upstream 16515 9758328 ~ 9785173 (+) False LOC110520735
XM_036937389.1 mRNA upstream 16515 9764770 ~ 9785173 (+) False LOC110520735
XM_036937396.1 mRNA upstream 24881 9773574 ~ 9776807 (+) False LOC118937659
XM_036937390.1 mRNA upstream 43787 9744866 ~ 9757901 (+) False LOC110520736
XM_036937386.1 mRNA upstream 58965 9701990 ~ 9742723 (+) False LOC110506952
XM_036937399.1 mRNA downstream 15202 9821130 ~ 9845619 (+) False LOC110520749
XM_036937401.1 mRNA downstream 15203 9821131 ~ 9845619 (+) True LOC110520749
XM_036937413.1 mRNA downstream 43206 9849134 ~ 9983302 (+) False LOC110507293
XM_036937415.1 mRNA downstream 64054 9869982 ~ 9983302 (+) False LOC110507293
XM_036937418.1 mRNA downstream 64055 9869983 ~ 9983302 (+) False LOC110507293
TU127846 other upstream 25237 9774203 ~ 9776451 (+) True LOC118937659
TU127811 other upstream 77817 9702040 ~ 9723871 (+) False LOC110506952
TU127567 other upstream 357647 9440309 ~ 9444041 (+) False G111788
TU128663 other downstream 1005590 10811518 ~ 10826063 (+) False G112697
TU129356 other downstream 1434804 11240732 ~ 11243069 (+) False fbxo32
TU129360 other downstream 1455626 11261554 ~ 11273000 (+) False elovl4a
TU129361 other downstream 1455626 11261554 ~ 11272897 (+) True elovl4a
TU129492 other downstream 1609003 11414931 ~ 11415178 (+) True G113285

Expression Profile