RNA id: TU128021


Basic Information

Item Value
RNA id TU128021
length 507
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G112165
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9987313 ~ 9988353 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aagaaaacaggagaatgtaagagagagagagaaagaaaacaggagaatgtaagagagagagagaaagaaaacaggagaatgtaagagagagagagaaagaaaacaggagaatgtaagagagagagaaagaaaacaggagaatgtaagagagagagaaagaaaacaggagaatgtaagagagagagaaagaaaacaggagaatgtaagagagagagaaagaaaacaggagaatgtaagagagagagaaagaaaacaggagaatgtaagagagagaaagaaaacaggagaatgtaagagatagaaagaaaacaggagaatgtaagagagagagaaagaaaacaggagaatgtaagagagagaaagaaaacaggagaatgtaagagagagaaagaaaacaggagaatgtaagagagagaaagaaaacaggagaatgtaagagagagagaaagaaaacaggagaatgtaagagagagagaaagaaaacaggagaatgaaagagagaaagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128017 lncRNA upstream 1840 9984898 ~ 9985473 (+) True G112163
TU128016 lncRNA upstream 2655 9984443 ~ 9984658 (+) True G112162
TU127966 lncRNA upstream 91704 9894897 ~ 9895609 (+) True G112119
TU127933 lncRNA upstream 102052 9847951 ~ 9885261 (+) True LOC110507293
TU127908 lncRNA upstream 140103 9846071 ~ 9847210 (+) True G112080
TU128025 lncRNA downstream 2985 9991338 ~ 9991774 (+) True G112168
TU128026 lncRNA downstream 3497 9991850 ~ 9992170 (+) True G112169
TU128028 lncRNA downstream 7402 9995755 ~ 9996078 (+) True G112171
TU127979 lncRNA downstream 23979 10012332 ~ 10014291 (+) True LOC110493963
TU127981 lncRNA downstream 26486 10014839 ~ 10015927 (+) True G112133
XM_036937428.1 mRNA upstream 4011 9869984 ~ 9983302 (+) False LOC110507293
XR_005034956.1 mRNA downstream 18705 10007058 ~ 10014363 (+) False LOC110493963
XM_036937482.1 mRNA downstream 18710 10007063 ~ 10014363 (+) False LOC110493963
XM_036937498.1 mRNA downstream 32233 10020586 ~ 10035867 (+) False LOC110507380
XM_036937490.1 mRNA downstream 32244 10020597 ~ 10035867 (+) False LOC110507380
XM_036937502.1 mRNA downstream 47911 10036264 ~ 10074921 (+) True LOC110520763
TU127846 other upstream 210862 9774203 ~ 9776451 (+) True LOC118937659
TU127811 other upstream 263442 9702040 ~ 9723871 (+) False LOC110506952
TU127567 other upstream 543272 9440309 ~ 9444041 (+) False G111788
TU128663 other downstream 823165 10811518 ~ 10826063 (+) False G112697
TU129356 other downstream 1252379 11240732 ~ 11243069 (+) False fbxo32
TU129360 other downstream 1273201 11261554 ~ 11273000 (+) False elovl4a
TU129361 other downstream 1273201 11261554 ~ 11272897 (+) True elovl4a
TU129492 other downstream 1426578 11414931 ~ 11415178 (+) True G113285

Expression Profile