RNA id: TU128045


Basic Information

Item Value
RNA id TU128045
length 250
lncRNA type intronic
GC content 0.43
exon number 1
gene id G112179
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 10022256 ~ 10022505 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATTAAACAGATGTAACACGTCATCATTGACGATTTGTCACTGAAAGTACTTCATGTACTATATCACTGTCACCATGACATCTGACTTGATTGGTAttaaagtcaacagtgaagaaacATCTGCTGTTTAGATGGAACTGAAATGACTTGTCATATCATCACCAACGTTGTGTAATTGAAAGTGCTTCATACAGATGGCCCACATCAACTACTAAGGCATGGTTGGGAATAACTTCAACAGTATAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127987 lncRNA upstream 1653 10020205 ~ 10020603 (+) False LOC110507380
TU127981 lncRNA upstream 6329 10014839 ~ 10015927 (+) True G112133
TU127979 lncRNA upstream 7965 10012332 ~ 10014291 (+) True LOC110493963
TU128028 lncRNA upstream 26178 9995755 ~ 9996078 (+) True G112171
TU128026 lncRNA upstream 30086 9991850 ~ 9992170 (+) True G112169
TU128046 lncRNA downstream 5530 10028035 ~ 10029544 (+) True G112180
TU127975 lncRNA downstream 11642 10034147 ~ 10035858 (+) True LOC110507380
TU128069 lncRNA downstream 63479 10085984 ~ 10090231 (+) True G112200
TU128119 lncRNA downstream 161046 10183551 ~ 10296699 (+) True G112241
TU128159 lncRNA downstream 236347 10258852 ~ 10301455 (+) True G112273
XR_005034956.1 mRNA upstream 7893 10007058 ~ 10014363 (+) False LOC110493963
XM_036937482.1 mRNA upstream 7893 10007063 ~ 10014363 (+) False LOC110493963
XM_036937443.1 mRNA upstream 38954 9869985 ~ 9983302 (+) False LOC110507293
XM_036937502.1 mRNA downstream 13759 10036264 ~ 10074921 (+) True LOC110520763
XM_036937507.1 mRNA downstream 99940 10122445 ~ 10150796 (+) True LOC110507402
LOC110520765 mRNA downstream 150059 10172564 ~ 10184239 (+) True LOC110520765
XM_036937532.1 mRNA downstream 163600 10186105 ~ 10189115 (+) True LOC110507434
XM_036937513.1 mRNA downstream 194764 10217269 ~ 10219572 (+) False LOC118937668
TU127846 other upstream 245805 9774203 ~ 9776451 (+) True LOC118937659
TU127811 other upstream 298385 9702040 ~ 9723871 (+) False LOC110506952
TU127567 other upstream 578215 9440309 ~ 9444041 (+) False G111788
TU128663 other downstream 789013 10811518 ~ 10826063 (+) False G112697
TU129356 other downstream 1218227 11240732 ~ 11243069 (+) False fbxo32
TU129360 other downstream 1239049 11261554 ~ 11273000 (+) False elovl4a
TU129361 other downstream 1239049 11261554 ~ 11272897 (+) True elovl4a
TU129492 other downstream 1392426 11414931 ~ 11415178 (+) True G113285

Expression Profile