RNA id: TU128069


Basic Information

Item Value
RNA id TU128069
length 330
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G112200
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 10085984 ~ 10090231 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctcctctcatcagaccagactagtatagatgtctctcctctcaccagactattatagatgtctctcctctcatcagaccagactagtatagatgtctctcctctcaccagaccagactattatagatgtctctcctctcatcagaccagactagtatagatgtctctcctctcaccagaccagactagtatagatgtctctctcaccagaccagactagtatagatgtcagGGGGATATTAATCCATGTAGGAGATGGGGACAGATGTATTTATTTGTTCAGTCTGTATACGGTATGTGTTATCATCTTTACTTTGTTCAGTGTCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127975 lncRNA upstream 50126 10034147 ~ 10035858 (+) True LOC110507380
TU128046 lncRNA upstream 56440 10028035 ~ 10029544 (+) True G112180
TU128045 lncRNA upstream 63479 10022256 ~ 10022505 (+) True G112179
TU127987 lncRNA upstream 65381 10020205 ~ 10020603 (+) False LOC110507380
TU127981 lncRNA upstream 70057 10014839 ~ 10015927 (+) True G112133
TU128119 lncRNA downstream 93320 10183551 ~ 10296699 (+) True G112241
TU128159 lncRNA downstream 168621 10258852 ~ 10301455 (+) True G112273
TU128509 lncRNA downstream 239319 10329550 ~ 10329961 (+) True G112556
TU128519 lncRNA downstream 256465 10346696 ~ 10346984 (+) True G112566
TU128540 lncRNA downstream 275162 10365393 ~ 10365667 (+) True G112585
XM_036937502.1 mRNA upstream 11063 10036264 ~ 10074921 (+) True LOC110520763
XM_036937498.1 mRNA upstream 50117 10020586 ~ 10035867 (+) False LOC110507380
XM_036937490.1 mRNA upstream 50117 10020597 ~ 10035867 (+) False LOC110507380
XR_005034956.1 mRNA upstream 71621 10007058 ~ 10014363 (+) False LOC110493963
XM_036937482.1 mRNA upstream 71621 10007063 ~ 10014363 (+) False LOC110493963
XM_036937507.1 mRNA downstream 32214 10122445 ~ 10150796 (+) True LOC110507402
LOC110520765 mRNA downstream 82333 10172564 ~ 10184239 (+) True LOC110520765
XM_036937532.1 mRNA downstream 95874 10186105 ~ 10189115 (+) True LOC110507434
XM_036937513.1 mRNA downstream 127038 10217269 ~ 10219572 (+) False LOC118937668
XM_036937511.1 mRNA downstream 127133 10217364 ~ 10219572 (+) True LOC118937668
TU127846 other upstream 309533 9774203 ~ 9776451 (+) True LOC118937659
TU127811 other upstream 362113 9702040 ~ 9723871 (+) False LOC110506952
TU127567 other upstream 641943 9440309 ~ 9444041 (+) False G111788
TU128663 other downstream 721287 10811518 ~ 10826063 (+) False G112697
TU129356 other downstream 1150501 11240732 ~ 11243069 (+) False fbxo32
TU129360 other downstream 1171323 11261554 ~ 11273000 (+) False elovl4a
TU129361 other downstream 1171323 11261554 ~ 11272897 (+) True elovl4a
TU129492 other downstream 1324700 11414931 ~ 11415178 (+) True G113285

Expression Profile