RNA id: TU128431


Basic Information

Item Value
RNA id TU128431
length 1303
lncRNA type read_through
GC content 0.38
exon number 5
gene id G112491
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 10184147 ~ 10296999 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgatgttccaaacatattgctcactatatgtctgtgGCAGAGAGACTAGAAAGCATGAGAAAGTAATGGAAATTGTCCCCCCAAAATATGCTTTCTATTTCAAATGAAAatggagaacagtctatgaaggAAAATAAGAGTTTTGGTGCAGAGACAACCAACTAACACAAAAATAATAGTTTGATATTGTTGATGCGATACGACATGATATATTGTGgaaaataatatcccgatatgtaactatCCATTTTTTTCCCCTTCATTACTATTGGATAGGCGTTGCTGTTATAAATGTAGTTACTTATTGACACCATTGAGGTAGGGTTTGTTAAGATGACAGATTAGTTTATCGTAGCTTCTGGtcactactgtatgtattgtctTATCAAAAGGAATACAATGAAATATAGTGATTAAAGATCTGCTTTTTATTAAAATGTCCAGAAGCAGATGTAGCAGAAAAGGATCAACAAATAACAAATGCAGTGTATAAAATAGTGAAGGTGAAACACCCTGAAACACTATTATCTCCCCATAATATTTGATTGTTCAATTAATCAAAGATATAATTAATCCTTTATATCCCATATGAATCTTTCCTTTATTGTGATAAAATGTGATAACAACGCATGTTGACCCAAGCTGACAGGACTGTTTGAATATTCCTATCTAATGGATGCTTCATGAGAATTTGAACTGAATGAATTTGAATGTTAAGAAATATTTTATTACTGCTTCAAGTGAGGAATCACCTCAAAAGTACTTCCAAAGTACTCAAAACATTCCAATTCAATCAGTGAAATTAAAGTGAAATAACAAACAGATAGTGAAATAAAAACTGTTCTGTCAGCGTCTGTCAAACATCCGTCCATCATATAAGGCCAGTTTCCTGGACCCAGATTAAGTTtactcctggactaaaaagcatTTTTTCCCCTAATAAATAGGAGTTACTGTTTCCAGTGCTGTTCCCAGAGTACTGTTTCCAGCCCCTTCCATGTCCACAAATCCCCAGTGGGCTCCGATGGAGGTGATCCCGGCACCGTTGAAGGAGACCTGGTTGGGCATGCCGGCTGACAGAGTGCGCCCCATGTTGGTGGTTAACACCAGGTAGCAGATGTAGTCTGCTGGGTTGTACTTCCCAGACACCTCAACGATGGCCTCATCATTAAACAGCTCAATCTCCTGCTTTAAGCCCCCTTCACCACCAAACACAGGAGACCAGTTGCTACCGTATCTGAGCTGCAACCTAAAACAGAGGAAGCTTTTCAAGTTGGTTGTGTTTTGATAAGGCACATTCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128360 lncRNA downstream 11785 10086449 ~ 10176197 (-) True G112438
TU128409 lncRNA downstream 27969 10159560 ~ 10160013 (-) True G112481
TU128402 lncRNA downstream 37200 10149736 ~ 10150782 (-) True G112474
TU128398 lncRNA downstream 41608 10145740 ~ 10146374 (-) True G112471
TU128365 lncRNA downstream 103235 10083108 ~ 10084747 (-) True G112440
TU128510 lncRNA upstream 32619 10329618 ~ 10329958 (-) True G112557
TU128512 lncRNA upstream 33093 10330092 ~ 10330324 (-) True G112559
TU128541 lncRNA upstream 68459 10365458 ~ 10365667 (-) True G112586
TU128905 lncRNA upstream 94959 10391958 ~ 10392200 (-) True G112875
TU128906 lncRNA upstream 95280 10392279 ~ 10392498 (-) True G112876
trnaa-ugc-2 mRNA downstream 89005 10098902 ~ 10098977 (-) True trnaa-ugc-2
XM_021568587.2 mRNA downstream 181172 10000736 ~ 10006810 (-) False LOC110493960
XM_036937553.1 mRNA upstream 3706 10300705 ~ 10309293 (-) True LOC110507471
XM_036961607.1 mRNA upstream 19779 10316778 ~ 10354245 (-) True LOC118944052
XM_036937563.1 mRNA upstream 104920 10401919 ~ 10611446 (-) False LOC110520767
XM_036937571.1 mRNA upstream 207272 10504271 ~ 10611447 (-) False LOC110520767
NM_001124345.1 mRNA upstream 418306 10715305 ~ 10718380 (-) True ccka
TU128303 other downstream 184339 10000730 ~ 10003643 (-) False LOC110493960
TU128304 other downstream 184485 10000730 ~ 10003497 (-) False LOC110493960
TU127903 other downstream 407527 9779011 ~ 9780455 (-) True G112076
TU127893 other downstream 426317 9761300 ~ 9761665 (-) True G112066
TU127773 other downstream 552852 9634537 ~ 9635130 (-) True G111955
TU128520 other upstream 49472 10346471 ~ 10346935 (-) True G112567
TU128973 other upstream 273443 10570442 ~ 10570808 (-) True G112928
TU129012 other upstream 351266 10648265 ~ 10718658 (-) True G112965
TU129027 other upstream 439730 10736729 ~ 10808244 (-) True eif3h
TU129220 other upstream 724042 11021041 ~ 11021734 (-) True G113096

Expression Profile