RNA id: TU128159


Basic Information

Item Value
RNA id TU128159
length 4490
lncRNA type read_through
GC content 0.44
exon number 2
gene id G112273
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 10258852 ~ 10301455 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTATTAttagattttatttttatttcacctttatttaactaggtaggccagatgagaacaagttctcatttacaactgcgacctggccaagataaagcatagcaatgcaacacagagttacacatggaataaacaaacatacagtcaataacacaatagaaaagtctacagtgtgtgcaaacgaggtaagattagggacgtaaggcaataaataggccgtagtggcgaagtaattacaatttagcaattaaacactggagtgatagatgtgcagaagatgaatgtgcaagtagagatactagggtgcaaaggagcacaaataaataaataaaaatatgggGGTGAGATAGTTGGATGGGCTTTTTACAGATGGgctttttacagatgggctatgtacaggtgcaatgatcggcaagctgctctgacagctgatggttaaagttagagagggagatatgagtctccagcttcagtgacttttgcaattcgttccagtcattggcagcagagaactggaaggaaaggcagccaaaggaggaattggcttagggggtgaccagtgaaatacacctgctggagtgtgtgctatgggtgagtgctgctatggtgaccagtgagctgagataagggggggctttacttagcaaagacttatagatgacctggagccagtgggtttggagacgaatatgaagcgagggcaagccaacgagatcatacaggtcgcagtggtgggtagtacatgggctttggtgacaaaacggatggcactgtgatagattgcatccaatttgctgagtagtgggttggaagctattttgtaaatgacatcgccaaagtcaaggatcggtaggatagtcagttttacgagggtatttttgccagaatgagtgaaggatgctttgtttacgaaataggaagccgattctagacttaattttggattggaggtgCTTAATGTGTCttaatgagtctggaaggagagtttacagtctaaccagacacctaggtatttgtagttgtccacatattctcagtcagaaccgtccagagtagtgatgctagacaggcgggcaggtgcgggcagtgatcggttgaagagcatgcatttagtttacttgcatttaagagtaaTTGGAGaaaacggaaggagagttgtatgacattgaagcttgtctggaagatagttaacacagtgtccaaaaaagggacagacgtatacagaatggtgtcgtctgcatagaggtggatcagagagtcaccagcagcaagagtgacatcattgatgtatagagactgccagaggtccggacaacaggccctccgatttgacacactgaactctgagaagtagttggtgaaccaggcaaagcagtcatttgagaaactaaggcttttgagtctgccgataagaatgtggtgattgacagagtcgaaaaccttggccaggtcaatgaatacggctgaacagtattgtcttttatcgatggcagtcatgatattgtttaggaccttgagcgtggctgaggtgtacccatgaccagctcggaaaccagattgcaaagcggagaaggtacggtgggattcgaaaatggcggtgatctgtttgttaaccttaaaaggcagggtaggatagatttaagtctataacagtttgggtcaagagtgtctccccgttttgaagatggggatgaccgcggcagctgtccaatctttggggatctcagacgatatgaaatagaggttgaacaggctagtgatagaggttgcaacaattgcggcatatcattttagaaagagagggtacagattgtctagcccaactGATATGTattggtccagattttgcagcactttcagaacatcagctatctggatttggttgatggagaaatggggaggcttagggaagttgctgtggggggtgcagaactgttgaccggggtagccaggtggaaagcatagccgtagaaaaatgcttatttaaattctcaattatcgtggatttattggtggtggcagtgtttcctagcctaggtgcagtgggcagctgggaggaggttctcttattctccatgaactttacagtgtcgcagaactttttggagtttgctacaggatgcaaatttctgtttgaaaaagctagccatagctttcctaactgcctgtgtatattggttcctaacttccctgaaaagttgcatatcccgggggctattcgatgctaatgcagtacgtcacaggatgtttttgtgctggtcaagggcagtcaggtctggagtgaaccatgggctatatctgttcctggtttaaAATTTTTTGAAtgaggcatgcttatttaagatggtgaggaaagcccttttaaagaataaccaggcatcctctactgacggaatgaagtcaatatccttccaggatacccgggccaggtcgattagaaaggcctgcttgctgaagtgttttagggagcgtttgacagtgatgaggggtggttgtttgaccgcagaccTATTACgaacacaggcaatgaggcagtgaagAACGGCAACGGttgaggtgtatttagagggcaggttggtcaggatgacatcTGTGAGGGGgcccgtgtttatggatttggggttgtacctgataagttcattgataatttgtgtgagattgagggcatctagcttagattgtaaaacggctggggtgttaagcatgtcccagtttaggtcacctaacagtacgagttctgaagatagatgggaggcaatcagttcacatatggtgtccagggcacagctgggggctgaaggtggtctataacaagcggcaacggtgagagacttgtttctggaaaggggGATTTAAAGAAaatagaagctcgaattgtttgggcacagacctggatagtatgacagaactctgtaggctatctctgcagtagattgcaactccgccccctttggtagttctatcttgtcggaaaatgttatagtttgagatggaaatttcaggatttttggtggccttcctaagccaggattcagacacggctaggacatccgggttggcagagtgtgctaaaacagtgaataaaacaaacttagggaggaggcttcgaattgggtgaggcgggttgcaggagtaTGCTGAAATTGAGGTTAaaaatattacaaatatatacgaaatatatacaaagaaaaacatatatatacacgggacacgacaagacaaagacggctgactgctacgccatcttggatttttGTCCCACTCCATTGAagttccacaggccacaatcaacatcctgatcaactttatgcaaaggagatgtgatgcgctgcatgaggcaaatggtggtcaccccagatactgactggttttctaagCCACGTCCctactttttttaaggtatctgtgaccaacagatgcatatctgtatttccagttatgtgaaatccatagattagggcctaatgaatttatttcaattgactgatatccttatatgaaccataactcagtaaaatcttttaaatagttgcatgttgcgtttatatttttgttcagtgtagctgaCTCCTATTAGTGAAATGTATTATTCGTATATGATCATTTTTTTGAATGATCAAAAAGAGAATTGACTGTAATGTTCTTCATCAGCCCTGTTTCTTAGCCTTGTATTGTGGCACCATCTAGTGTGGGACAACATTACTGTCCAATCCATTTTAATATTGGAGTTAAAGCTTTGATCTCCAGCTTCAGAAAAATAGAATAGCCACTTTGTTAGCTTCAGTCATTTTcatccaaatgtattttttttaaactcatgAGTGCATAAGAAGTAAAAGCATCACTGAGGTTCAGGGTCTGTCATTCCAACAGATGAAACACACCATAACTCTAAAATAACAGAGAAAAGAGAAATGTCTTCCAAAGGGAAGGAGTGGTTATTACACTTAACCATGTGTACTTTTCAAGGTCCTTCATGCGTTCCATAACGGATATACTTTAGCTGTCCTTTGTGATTGGTTATTGTTCCTCATCCCTTGATCTCCACGATTTAAAACTTAAATATGTACTTCCTGCATAGCAGAGTGACACCAGGAAGGCAAAGAACTGAAAAACAGACGGATGAAAACATGAAAATTCAGTACAATACTGAGTATGAGTTGAGTAGGCTTAAATGGACCAAATAGATAGCATTCTGGATGGTACACAGTGGAATCATACCTCTCTTATCTGACTTGTAAGCATATATTTGGCATTTTAATATTGTATAATTTAATATCGCTGTAATCATAAATCATATTTGTGGTATATTTTCACAGTTGGCGTGATTTAAATGTCTGTCTGGGAGTTCTAAGGTGGTTTTCTTACTGTGGATGCTACCCAGCAGTTGTAGTTATGGCGTCCCTTAACAGCATGGCTGATTGAGGCTGCGTCCACTGCTGCTGCCACCACATACATCACTGTAGCACTACTGTTGAAGAACAGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128069 lncRNA upstream 168621 10085984 ~ 10090231 (+) True G112200
TU127975 lncRNA upstream 222994 10034147 ~ 10035858 (+) True LOC110507380
TU128046 lncRNA upstream 229308 10028035 ~ 10029544 (+) True G112180
TU128045 lncRNA upstream 236347 10022256 ~ 10022505 (+) True G112179
TU127987 lncRNA upstream 238249 10020205 ~ 10020603 (+) False LOC110507380
TU128509 lncRNA downstream 28095 10329550 ~ 10329961 (+) True G112556
TU128519 lncRNA downstream 45241 10346696 ~ 10346984 (+) True G112566
TU128540 lncRNA downstream 63938 10365393 ~ 10365667 (+) True G112585
TU128544 lncRNA downstream 64646 10366101 ~ 10391656 (+) True LOC110535244
TU128561 lncRNA downstream 106970 10408425 ~ 10408770 (+) True G112605
XM_036937520.1 mRNA upstream 20473 10235740 ~ 10238379 (+) False LOC110517641
XM_036937526.1 mRNA upstream 20473 10235740 ~ 10238379 (+) True LOC110517641
XM_036937513.1 mRNA upstream 39280 10217269 ~ 10219572 (+) False LOC118937668
XM_036937511.1 mRNA upstream 39280 10217364 ~ 10219572 (+) True LOC118937668
XM_036937532.1 mRNA upstream 69737 10186105 ~ 10189115 (+) True LOC110507434
XM_036937587.1 mRNA downstream 64677 10366132 ~ 10402645 (+) False LOC110535244
XM_036937595.1 mRNA downstream 64677 10366132 ~ 10402645 (+) False LOC110535244
XM_036937619.1 mRNA downstream 64677 10366132 ~ 10402645 (+) False LOC110535244
XM_036937602.1 mRNA downstream 64856 10366311 ~ 10402645 (+) False LOC110535244
XM_036937607.1 mRNA downstream 78907 10380362 ~ 10402645 (+) False LOC110535244
TU127846 other upstream 482401 9774203 ~ 9776451 (+) True LOC118937659
TU127811 other upstream 534981 9702040 ~ 9723871 (+) False LOC110506952
TU127567 other upstream 814811 9440309 ~ 9444041 (+) False G111788
TU128663 other downstream 510063 10811518 ~ 10826063 (+) False G112697
TU129356 other downstream 939277 11240732 ~ 11243069 (+) False fbxo32
TU129360 other downstream 960099 11261554 ~ 11273000 (+) False elovl4a
TU129361 other downstream 960099 11261554 ~ 11272897 (+) True elovl4a
TU129492 other downstream 1113476 11414931 ~ 11415178 (+) True G113285

Expression Profile