RNA id: TU128481



Basic Information


Item Value
RNA id TU128481
length 343
lncRNA type sense_over
GC content 0.35
exon number 2
gene id G112532
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 10258879 ~ 10280539 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aatagcccacacattttcacctacctcatccccatactgtttttatttatttacttttctgctcttttgcacaccaatatctctacctgtacatgaccatctgatcatttatcactccagtgttaatctgcaaaattgtaattatttgcctaccttctcatgccttttgcacacattgtatatagactccccctttgttttctactgtgttattgacttgttaattgtttactccatgtgtaactctgtgttgtctgctcatactgctttgctttatcttggccaggtcgcagttgtaaatgagaacttgttctcatctggcctacctagttaaataaaggtg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU128427 lncRNA downstream 20437 10188811 ~ 10238442 (-) False G112491
TU128434 lncRNA downstream 39304 10187982 ~ 10219575 (-) False G112491
TU128421 lncRNA downstream 47356 10181054 ~ 10211523 (-) True G112490
TU128409 lncRNA downstream 98866 10159560 ~ 10160013 (-) True G112481
TU128402 lncRNA downstream 108097 10149736 ~ 10150782 (-) True G112474
TU128510 lncRNA upstream 49079 10329618 ~ 10329958 (-) True G112557
TU128512 lncRNA upstream 49553 10330092 ~ 10330324 (-) True G112559
TU128541 lncRNA upstream 84919 10365458 ~ 10365667 (-) True G112586
TU128905 lncRNA upstream 111419 10391958 ~ 10392200 (-) True G112875
TU128906 lncRNA upstream 111740 10392279 ~ 10392498 (-) True G112876
trnaa-ugc-2 mRNA downstream 159902 10098902 ~ 10098977 (-) True trnaa-ugc-2
XM_021568587.2 mRNA downstream 252069 10000736 ~ 10006810 (-) False LOC110493960
XM_036937553.1 mRNA upstream 20166 10300705 ~ 10309293 (-) True LOC110507471
XM_036961607.1 mRNA upstream 36239 10316778 ~ 10354245 (-) True LOC118944052
XM_036937563.1 mRNA upstream 121380 10401919 ~ 10611446 (-) False LOC110520767
XM_036937571.1 mRNA upstream 223732 10504271 ~ 10611447 (-) False LOC110520767
NM_001124345.1 mRNA upstream 434766 10715305 ~ 10718380 (-) True ccka
TU128303 other downstream 255236 10000730 ~ 10003643 (-) False LOC110493960
TU128304 other downstream 255382 10000730 ~ 10003497 (-) False LOC110493960
TU127903 other downstream 478424 9779011 ~ 9780455 (-) True G112076
TU127893 other downstream 497214 9761300 ~ 9761665 (-) True G112066
TU127773 other downstream 623749 9634537 ~ 9635130 (-) True G111955
TU128520 other upstream 65932 10346471 ~ 10346935 (-) True G112567
TU128973 other upstream 289903 10570442 ~ 10570808 (-) True G112928
TU129012 other upstream 367726 10648265 ~ 10718658 (-) True G112965
TU129027 other upstream 456190 10736729 ~ 10808244 (-) True eif3h
TU129220 other upstream 740502 11021041 ~ 11021734 (-) True G113096

Expression Profile