RNA id: TU128566


Basic Information

Item Value
RNA id TU128566
length 575
lncRNA type intronic
GC content 0.40
exon number 1
gene id G112610
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 10422633 ~ 10423207 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccaccaccatatgtctagttaaaccccatcatcctcagtaaagttgtttaaccaccaccatatgtctgtgtctagttaaaccccatcatcctcagtaaagttgtttaaccaccaccatatgtctgtgtctagttaaaccccatcatcctcagtaaagttgtttaaccaccaccatatgtctagttaaaccccatcatcctcagtaaagttgtttaaccaccaccatatgtctgtgtctagttaaaccccatcatcctcagtaaagttgtttaaccaccatatgtctgtgtctagttaaaccccatcatcctcagtaaagatgtttaaccatcaccatgtctagttaaaccccatcatcctcagtaaagttgtttaaccaccaccatatgtctgtgtttagttaaaccccatcatcctcagtaaagttgtttaaccaccaccatatgtctgtgtctagttaaaccccatcatcctcagtaaagatgtttaaccaccactatatgtctagttaaaccccatcatcctcagtaaagttgtttaaccaccaccatatgtctagttaaaccccatcatcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128561 lncRNA upstream 13863 10408425 ~ 10408770 (+) True G112605
TU128544 lncRNA upstream 30977 10366101 ~ 10391656 (+) True LOC110535244
TU128540 lncRNA upstream 56966 10365393 ~ 10365667 (+) True G112585
TU128519 lncRNA upstream 75649 10346696 ~ 10346984 (+) True G112566
TU128509 lncRNA upstream 92672 10329550 ~ 10329961 (+) True G112556
TU128568 lncRNA downstream 4606 10427813 ~ 10428226 (+) True G112612
TU128569 lncRNA downstream 5085 10428292 ~ 10428545 (+) True G112613
TU128572 lncRNA downstream 11353 10434560 ~ 10434835 (+) True G112616
TU128573 lncRNA downstream 14201 10437408 ~ 10437872 (+) True G112617
TU128575 lncRNA downstream 15346 10438553 ~ 10439091 (+) True G112619
XM_036937602.1 mRNA upstream 19988 10366311 ~ 10402645 (+) False LOC110535244
XM_036937638.1 mRNA downstream 203379 10626586 ~ 10710360 (+) False LOC110507508
XM_036937639.1 mRNA downstream 203379 10626586 ~ 10710360 (+) False LOC110507508
XM_036937624.1 mRNA downstream 241331 10664538 ~ 10710360 (+) False LOC110507508
XM_036937620.1 mRNA downstream 243378 10666585 ~ 10710360 (+) False LOC110507508
XM_036937651.1 mRNA downstream 243379 10666586 ~ 10709384 (+) False LOC110507508
TU127846 other upstream 646182 9774203 ~ 9776451 (+) True LOC118937659
TU127811 other upstream 698762 9702040 ~ 9723871 (+) False LOC110506952
TU127567 other upstream 978592 9440309 ~ 9444041 (+) False G111788
TU128663 other downstream 388311 10811518 ~ 10826063 (+) False G112697
TU129356 other downstream 817525 11240732 ~ 11243069 (+) False fbxo32
TU129360 other downstream 838347 11261554 ~ 11273000 (+) False elovl4a
TU129361 other downstream 838347 11261554 ~ 11272897 (+) True elovl4a
TU129492 other downstream 991724 11414931 ~ 11415178 (+) True G113285

Expression Profile