RNA id: TU128569


Basic Information

Item Value
RNA id TU128569
length 254
lncRNA type intronic
GC content 0.40
exon number 1
gene id G112613
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 10428292 ~ 10428545 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccccatcatcctcagtaaagttgtttaaccaccatatgtctgtgtctagttaaaccccatcatcctcagtaaagttgtttaaccaccatatgtctagttaaaccccatcatcctcagtacagttgtttaaccaccaccatatgtctagttaaaccccatcatcctcagtaaagttgtttaaccaccaccatatgtctgtgtctagttaaaccccatcatcctcagtaaagttgtttaaccaccaccatatgtct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128568 lncRNA upstream 66 10427813 ~ 10428226 (+) True G112612
TU128566 lncRNA upstream 5085 10422633 ~ 10423207 (+) True G112610
TU128561 lncRNA upstream 19522 10408425 ~ 10408770 (+) True G112605
TU128544 lncRNA upstream 36636 10366101 ~ 10391656 (+) True LOC110535244
TU128540 lncRNA upstream 62625 10365393 ~ 10365667 (+) True G112585
TU128572 lncRNA downstream 6015 10434560 ~ 10434835 (+) True G112616
TU128573 lncRNA downstream 8863 10437408 ~ 10437872 (+) True G112617
TU128575 lncRNA downstream 10008 10438553 ~ 10439091 (+) True G112619
TU128576 lncRNA downstream 13767 10442312 ~ 10442937 (+) True G112620
TU128578 lncRNA downstream 15270 10443815 ~ 10444661 (+) True G112622
XM_036937602.1 mRNA upstream 25647 10366311 ~ 10402645 (+) False LOC110535244
XM_036937638.1 mRNA downstream 198041 10626586 ~ 10710360 (+) False LOC110507508
XM_036937639.1 mRNA downstream 198041 10626586 ~ 10710360 (+) False LOC110507508
XM_036937624.1 mRNA downstream 235993 10664538 ~ 10710360 (+) False LOC110507508
XM_036937620.1 mRNA downstream 238040 10666585 ~ 10710360 (+) False LOC110507508
XM_036937651.1 mRNA downstream 238041 10666586 ~ 10709384 (+) False LOC110507508
TU127846 other upstream 651841 9774203 ~ 9776451 (+) True LOC118937659
TU127811 other upstream 704421 9702040 ~ 9723871 (+) False LOC110506952
TU127567 other upstream 984251 9440309 ~ 9444041 (+) False G111788
TU128663 other downstream 382973 10811518 ~ 10826063 (+) False G112697
TU129356 other downstream 812187 11240732 ~ 11243069 (+) False fbxo32
TU129360 other downstream 833009 11261554 ~ 11273000 (+) False elovl4a
TU129361 other downstream 833009 11261554 ~ 11272897 (+) True elovl4a
TU129492 other downstream 986386 11414931 ~ 11415178 (+) True G113285

Expression Profile