RNA id: TU128933


Basic Information

Item Value
RNA id TU128933
length 536
lncRNA type intronic
GC content 0.43
exon number 1
gene id G112895
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 10450320 ~ 10450855 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAACACCACCCTATCTGcaccagtcttggtgttcatcaAGGTGTGGACCAACACCACCCTATCTAcaccagtcttggtgttcatcaAGGTTTGGACCAACGCTACCCTATCTGcaccagtcttggtgttcatGAAGGTTTGGACCAACACCACCCTATCTAcaccagtcttggtgttcatcaAGGTTTAGACCAACGCCACCCTTTCTGCACCATTCTTGGTGTTCATCAAGGTTTGGACCAACGCCACCCTATCTGcaccagtcttggtgttcatcaaggtttggaccaacaccaccctatctacaccagtcttggtgttcatcaAGGTTTAGACCAACGCCACCCTTTCTGcaccagtcttggtgttcatcaaggtttggaccaacaccaccctatctgcaccagtcttggtgttcatcaGGTTATGACCAACACCACCCTATCTGCACCAGTCTTCTTGTTCACCGGGTTTGAACCAATGCTACCCTATCTGcaccagtcttggtgttcatcaaggtttggaccaacaccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128932 lncRNA downstream 506 10449499 ~ 10449814 (-) True G112894
TU128927 lncRNA downstream 7383 10442647 ~ 10442937 (-) True G112889
TU128926 lncRNA downstream 13303 10436525 ~ 10437017 (-) True G112888
TU128925 lncRNA downstream 27090 10422619 ~ 10423230 (-) True G112887
TU128918 lncRNA downstream 41217 10408887 ~ 10409103 (-) True G112882
TU128951 lncRNA upstream 53421 10504276 ~ 10504589 (-) True LOC110520767
TU128957 lncRNA upstream 70691 10521546 ~ 10522003 (-) True G112914
TU128964 lncRNA upstream 101592 10552447 ~ 10552758 (-) True G112920
TU128970 lncRNA upstream 114596 10565451 ~ 10565739 (-) True G112925
TU128974 lncRNA upstream 120203 10571058 ~ 10571341 (-) True G112929
XM_036961607.1 mRNA downstream 96075 10316778 ~ 10354245 (-) True LOC118944052
XM_036937553.1 mRNA downstream 141027 10300705 ~ 10309293 (-) True LOC110507471
XM_036937549.1 mRNA downstream 182671 10262320 ~ 10267649 (-) True LOC110507454
trnaa-ugc-2 mRNA downstream 351343 10098902 ~ 10098977 (-) True trnaa-ugc-2
XM_021568590.2 mRNA downstream 443510 10000736 ~ 10006810 (-) False LOC110493960
XM_036937571.1 mRNA upstream 53416 10504271 ~ 10611447 (-) False LOC110520767
NM_001124345.1 mRNA upstream 264450 10715305 ~ 10718380 (-) True ccka
NM_001165087.1 mRNA upstream 285889 10736744 ~ 10808233 (-) False eif3h
XM_036937655.1 mRNA upstream 308504 10759359 ~ 10762238 (-) False LOC118937678
XM_036937671.1 mRNA upstream 308504 10759359 ~ 10762238 (-) False LOC118937678
TU128520 other downstream 103385 10346471 ~ 10346935 (-) True G112567
TU128425 other downstream 153321 10218152 ~ 10296999 (-) True G112491
TU128303 other downstream 446677 10000730 ~ 10003643 (-) False LOC110493960
TU128304 other downstream 446823 10000730 ~ 10003497 (-) False LOC110493960
TU127903 other downstream 669865 9779011 ~ 9780455 (-) True G112076
TU128973 other upstream 119587 10570442 ~ 10570808 (-) True G112928
TU129012 other upstream 197410 10648265 ~ 10718658 (-) True G112965
TU129027 other upstream 285874 10736729 ~ 10808244 (-) True eif3h
TU129220 other upstream 570186 11021041 ~ 11021734 (-) True G113096
TU130068 other upstream 759618 11210473 ~ 11218154 (-) True G113688

Expression Profile