RNA id: TU128642


Basic Information

Item Value
RNA id TU128642
length 201
lncRNA type intronic
GC content 0.39
exon number 1
gene id G112676
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 10593052 ~ 10593252 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATTGAATAATGCACCCTACCAACACTGGATACGCAACAATGTCCAGACAGAGTAGAATACTGTGCCAGAAGTGATGTTTTCCCCATTCCATCCTGTTATTCTTCTACTTTAGCACTAAGGTCTACATTGTCAAACGGTGTCCATTAATCAACTGAGGTCTTTAGACATGACAGATTTAAAGCTCATTACTCCATGAatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128633 lncRNA upstream 12779 10580057 ~ 10580273 (+) True G112667
TU128632 lncRNA upstream 13158 10579682 ~ 10579894 (+) True G112666
TU128624 lncRNA upstream 24621 10568134 ~ 10568431 (+) True G112660
TU128620 lncRNA upstream 34840 10557967 ~ 10558212 (+) True G112657
TU128619 lncRNA upstream 39307 10552881 ~ 10553745 (+) True G112656
TU128643 lncRNA downstream 1067 10594319 ~ 10594612 (+) True G112677
TU128653 lncRNA downstream 14715 10607967 ~ 10608373 (+) True G112687
TU128660 lncRNA downstream 24939 10618191 ~ 10618534 (+) True G112694
TU128684 lncRNA downstream 35639 10628891 ~ 10629120 (+) True G112704
TU128699 lncRNA downstream 54581 10647833 ~ 10648087 (+) True G112719
XM_036937602.1 mRNA upstream 190407 10366311 ~ 10402645 (+) False LOC110535244
XM_036937638.1 mRNA downstream 33334 10626586 ~ 10710360 (+) False LOC110507508
XM_036937639.1 mRNA downstream 33334 10626586 ~ 10710360 (+) False LOC110507508
XM_036937624.1 mRNA downstream 71286 10664538 ~ 10710360 (+) False LOC110507508
XM_036937620.1 mRNA downstream 73333 10666585 ~ 10710360 (+) False LOC110507508
XM_036937651.1 mRNA downstream 73334 10666586 ~ 10709384 (+) False LOC110507508
TU127846 other upstream 816601 9774203 ~ 9776451 (+) True LOC118937659
TU127811 other upstream 869181 9702040 ~ 9723871 (+) False LOC110506952
TU127567 other upstream 1149011 9440309 ~ 9444041 (+) False G111788
TU128663 other downstream 218266 10811518 ~ 10826063 (+) False G112697
TU129356 other downstream 647480 11240732 ~ 11243069 (+) False fbxo32
TU129360 other downstream 668302 11261554 ~ 11273000 (+) False elovl4a
TU129361 other downstream 668302 11261554 ~ 11272897 (+) True elovl4a
TU129492 other downstream 821679 11414931 ~ 11415178 (+) True G113285

Expression Profile