RNA id: TU128660


Basic Information

Item Value
RNA id TU128660
length 344
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G112694
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 10618191 ~ 10618534 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgtgtattgttgtgaattgttagatactactgcactgttggagcgaggaacacaagcatttagctacacctgcaataacatctgctaaatatgtgtatgtgaccaataaaatgtgacttGAATTGATTTTGAAGACATTAAGTGAAGCTTGTTGTCGGGTAGAGCAAGTAGATAAAGGTCAGATGTTCTTTTGAGTGGTCAAATGGCCTTTTATTCTCTGGTGTTTTCAgacaacacacatacagtaggcataatctctctccttctctctttctctttctctttctctttctctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128653 lncRNA upstream 9818 10607967 ~ 10608373 (+) True G112687
TU128643 lncRNA upstream 23579 10594319 ~ 10594612 (+) True G112677
TU128642 lncRNA upstream 24939 10593052 ~ 10593252 (+) True G112676
TU128633 lncRNA upstream 37918 10580057 ~ 10580273 (+) True G112667
TU128632 lncRNA upstream 38297 10579682 ~ 10579894 (+) True G112666
TU128684 lncRNA downstream 10357 10628891 ~ 10629120 (+) True G112704
TU128699 lncRNA downstream 29299 10647833 ~ 10648087 (+) True G112719
TU128710 lncRNA downstream 38964 10657498 ~ 10754370 (+) False G112724
TU128722 lncRNA downstream 104684 10723218 ~ 10729484 (+) False G112736
TU128723 lncRNA downstream 106514 10725048 ~ 10729484 (+) True G112736
XM_036937602.1 mRNA upstream 215546 10366311 ~ 10402645 (+) False LOC110535244
XM_036937638.1 mRNA downstream 8052 10626586 ~ 10710360 (+) False LOC110507508
XM_036937639.1 mRNA downstream 8052 10626586 ~ 10710360 (+) False LOC110507508
XM_036937624.1 mRNA downstream 46004 10664538 ~ 10710360 (+) False LOC110507508
XM_036937620.1 mRNA downstream 48051 10666585 ~ 10710360 (+) False LOC110507508
XM_036937651.1 mRNA downstream 48052 10666586 ~ 10709384 (+) False LOC110507508
TU127846 other upstream 841740 9774203 ~ 9776451 (+) True LOC118937659
TU127811 other upstream 894320 9702040 ~ 9723871 (+) False LOC110506952
TU127567 other upstream 1174150 9440309 ~ 9444041 (+) False G111788
TU128663 other downstream 192984 10811518 ~ 10826063 (+) False G112697
TU129356 other downstream 622198 11240732 ~ 11243069 (+) False fbxo32
TU129360 other downstream 643020 11261554 ~ 11273000 (+) False elovl4a
TU129361 other downstream 643020 11261554 ~ 11272897 (+) True elovl4a
TU129492 other downstream 796397 11414931 ~ 11415178 (+) True G113285

Expression Profile