RNA id: TU128745


Basic Information

Item Value
RNA id TU128745
length 287
lncRNA type intronic
GC content 0.46
exon number 2
gene id G112751
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 10737776 ~ 10739040 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctctcttcctgtagagtCTAGTCTAATTCAGtgcagtctctctcttcctgtagagtCTAGTCTAATTCAGtgcagtctctctcttcctgtagagtCTGGGTCTAATTCAGtgcagtctctctcttcctgtagagtCTAGTCTAATTCAGtgcagtctctctcttcctgtagagtCTAGTCTACTTCAGtgcagtctctctcttcctgccttTCATTTAAAAGATAACAAAAACAGCAGCTTATAAAACATCAAATACAGCCACATGGAAAGAACCCATCATAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128678 lncRNA upstream 83 10736609 ~ 10737693 (+) False G112699
TU128720 lncRNA upstream 7608 10725875 ~ 10730168 (+) True G112734
TU128722 lncRNA upstream 8292 10723218 ~ 10729484 (+) False G112736
TU128723 lncRNA upstream 8292 10725048 ~ 10729484 (+) True G112736
TU128699 lncRNA upstream 89689 10647833 ~ 10648087 (+) True G112719
TU128706 lncRNA downstream 13860 10752900 ~ 10754370 (+) False G112724
TU128773 lncRNA downstream 35799 10774839 ~ 10775372 (+) True G112770
TU128708 lncRNA downstream 63650 10802690 ~ 10803291 (+) True G112724
TU128791 lncRNA downstream 71447 10810487 ~ 10810791 (+) True G112784
TU128665 lncRNA downstream 72478 10811518 ~ 10812593 (+) True G112697
XM_036937626.1 mRNA upstream 27416 10668176 ~ 10710360 (+) False LOC110507508
XM_036937888.1 mRNA downstream 292952 11031992 ~ 11074284 (+) False washc5
XM_036937880.1 mRNA downstream 292955 11031995 ~ 11083098 (+) True washc5
XM_036937915.1 mRNA downstream 345321 11084361 ~ 11096664 (+) False nsmce2
XM_036937906.1 mRNA downstream 345335 11084375 ~ 11096664 (+) False nsmce2
XM_036937901.1 mRNA downstream 345335 11084375 ~ 11097464 (+) False nsmce2
TU127846 other upstream 961325 9774203 ~ 9776451 (+) True LOC118937659
TU127811 other upstream 1013905 9702040 ~ 9723871 (+) False LOC110506952
TU127567 other upstream 1293735 9440309 ~ 9444041 (+) False G111788
TU128663 other downstream 72478 10811518 ~ 10826063 (+) False G112697
TU129356 other downstream 501692 11240732 ~ 11243069 (+) False fbxo32
TU129360 other downstream 522514 11261554 ~ 11273000 (+) False elovl4a
TU129361 other downstream 522514 11261554 ~ 11272897 (+) True elovl4a
TU129492 other downstream 675891 11414931 ~ 11415178 (+) True G113285

Expression Profile