RNA id: TU128665


Basic Information

Item Value
RNA id TU128665
length 1052
lncRNA type antisense_over
GC content 0.50
exon number 2
gene id G112697
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 10811518 ~ 10826063 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAATTAAAACACTTTTATTTCAAATTCTTTACAGAAGTATCACAACAGCTAGTTAACCATAAGACTTAAAAACATGGGATCGTCAACTTTCATTGAAACATGTCTAGTTTCtttatgcaacaacaacaacaatagctGTGGAGGTACAAAACGCAACGGGAATAAATGGGCATTATTATACACCTAAACAATACAATTCAATGCTAGTCGTAATATAGCCAATTTATCaacagaaataacaaaaaaagatgatttttttttttttaaagaaaaccaGGATTTTATGTCAAGTGCAATGAGGAAGAAGTCGAGGTGAAGAGCACTTATTCCATTTCTCTCATGATATAACAGTGCCTGTAAACAGCATGTATGTAAGCATAAAAGACTAAATGTTCTTAcaccattttttttggggggggggggggattcttgATTGGAGACTAAAATTTGATGAATCTTTTGATGAATTTGACCGTTACAGAGCAGTGGGACATGTATTGTTCCaacaccctccccctcccccccaccccaaaacaaACAACTAGTGTGGTCGaaaaaaaggaaCTTGACAGGAAATATAAATATACTGGATAAATGCATTTCTCACTTAAAAAAACACAATACTGCATGATTCAGTTGGTGGTAGATACAGTACAATCCTTTTCAAAGTTAGCATTTAGGACaccccccccaacaaaaaaaaatgcaaaaaaaaaacctaAAACATACATAAAAATAGTGAAAAAGAcatttccaaatggcaccatattccctatatagtgcactacttttgcccagaaCCCTAggaggctctggtcaaaagtagggcgcTGTATAGGAACCAGTGCCATTTGGACCTCGGGCAGTGTCTAAACCAGGTGGAATCTTGGTCCGGCTGTAGCGATGATGTCACTGTAAGGCTCGGTCTGGTTGAGCTCGATGGCCTGCTGTTTCTTCAGGACCAGGAAACTGTAGAACTTGGCGGCCGCCTGCTTCTTGTTGTTGTCTCGGCACAGCTCCAACAAGCTGACCTGCTCGGCTCCCGTCTTGGC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128791 lncRNA upstream 727 10810487 ~ 10810791 (+) True G112784
TU128677 lncRNA upstream 3269 10736687 ~ 10808249 (+) True G112699
TU128708 lncRNA upstream 8227 10802690 ~ 10803291 (+) True G112724
TU128773 lncRNA upstream 36146 10774839 ~ 10775372 (+) True G112770
TU128706 lncRNA upstream 57148 10752900 ~ 10754370 (+) False G112724
TU128796 lncRNA downstream 13885 10826478 ~ 10827075 (+) True G112788
TU128801 lncRNA downstream 17871 10830464 ~ 10830663 (+) True G112791
TU128803 lncRNA downstream 20992 10833585 ~ 10833786 (+) True G112793
TU128804 lncRNA downstream 25067 10837660 ~ 10839399 (+) True G112794
TU128806 lncRNA downstream 27606 10840199 ~ 10841233 (+) True G112796
XM_036937626.1 mRNA upstream 101158 10668176 ~ 10710360 (+) False LOC110507508
XM_036937888.1 mRNA downstream 219399 11031992 ~ 11074284 (+) False washc5
XM_036937880.1 mRNA downstream 219402 11031995 ~ 11083098 (+) True washc5
XM_036937915.1 mRNA downstream 271768 11084361 ~ 11096664 (+) False nsmce2
XM_036937906.1 mRNA downstream 271782 11084375 ~ 11096664 (+) False nsmce2
XM_036937901.1 mRNA downstream 271782 11084375 ~ 11097464 (+) False nsmce2
TU127846 other upstream 1035067 9774203 ~ 9776451 (+) True LOC118937659
TU127811 other upstream 1087647 9702040 ~ 9723871 (+) False LOC110506952
TU127567 other upstream 1367477 9440309 ~ 9444041 (+) False G111788
TU129356 other downstream 428139 11240732 ~ 11243069 (+) False fbxo32
TU129360 other downstream 448961 11261554 ~ 11273000 (+) False elovl4a
TU129361 other downstream 448961 11261554 ~ 11272897 (+) True elovl4a
TU129492 other downstream 602338 11414931 ~ 11415178 (+) True G113285
TU129561 other downstream 665383 11477976 ~ 11482741 (+) True G113313

Expression Profile