RNA id: TU128804


Basic Information

Item Value
RNA id TU128804
length 1740
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G112794
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 10837660 ~ 10839399 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtttctattggAATGTTAATCTCTATAAAATGATGTGTGTAAATGaccagggtggaggaagagaacaGGCAGGAAGAAGAGTGTCTgaattagcctggtcccagatcagtttgtgctgcgCTACAACGATCATaacaggagttggcaagacactacagacagatctgggaccagactgtGACTGAACCGACAGAGGCTCCGTAATGTTCCAGCGAAACACAGACAGGAACCTGTCTGCTACAGATCAGATGGAGTCACGTCCCAGTGTTTAGACAATAAGGTCACCTAAACAACCAGCTACTGTAGCAGTCAGTGTTACTGGGGACACAGAGAGATCTTCACTAAAATGGGAACTCCTCTGTTAAAAAGGCAACAATACAATCATTCTGAAGTGGCTTTCTTTAAAAAGGCACATTCATTTTCATCCTAGAACAGCAACAGGGGAATCAgaggcttgcatcccaaatgtcaccccattccctttatagtgcactacctttgaccagggcccatagggaatagggtgccatttgaccaggacacatagggaatagggtgccatttgaccaggacacatagggaatagggcccatagggaatagggtgccatttgaccagggcacatagggaatagggtgccatttgactagggcccatagggaatagggtgccatttgactagggcccatagggaatagggcccatagggaatagggtgccatttgactagggcccatagggaatagggtgccatttgactagggcccatagggaatagggtgccatttgaccagggcccatagggaatagggggccatttgaccagggcccatagggaatagggggacatttgggacacaacccagaATGAGAACAGGATCAGAGAGAGATTAGATTTAATCTCAAACACATATTGCGCCATGAGAATTAACCCATAgggttctgacacacacacacacacacacacacacacaccatgtgttTCTATTAATGCTGAGATATCTCATCTGTTGTCTGTCACGAGGcccactagctctggtccagggtgttagtgcAGCCTGTTCAGGAGGCTCAGTGTTAGAGAGCAGCACtaatgccctggaccagagctaggggCTACATCCTGGACTGTACAGTCACAcctcacacagtcacacctcaCACAGTCACACTACACAGTCACACTACAGTCACACCACACAGTCACACTACAGTCACACTACACAGTCAcacctcacacagacacactacacattcacacaacacagtcacacctcacacagtcacaccacacacagtcacactacAGTCACACACTACACAGTCACACTACACAGTCACACTACACACCATATAATCACACAGCCCTCACCTACAGTCGCACAGCCCTCACCTACAGTCACACAGCCCTCACCTACAGTCACACAGCCCTCACCTACAGTCACACAGCCCTCACCTAGTCACACAGCCCTCACCTACAGTCACACAGCCCTCACCTACAGTCACACAGCCCTCACCTACAGTCACACAGCCCTCACCTAGTCACACAGCCCTCACCTAGTCACACAGCCCTCACCTAGTCACACAGCCTTCACCTAAAAATGGAAAGGGGGACTTTTCTCTTATCAAAACAAGGGGACATTCTAGGGATGTGAAATCATTGAACATTAAAACATTGAACTGTTGGCACAATAATATAAATGTCATATTAATAATGAATCTATATAGATGTACACCGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128803 lncRNA upstream 3874 10833585 ~ 10833786 (+) True G112793
TU128801 lncRNA upstream 6997 10830464 ~ 10830663 (+) True G112791
TU128796 lncRNA upstream 10585 10826478 ~ 10827075 (+) True G112788
TU128665 lncRNA upstream 25067 10811518 ~ 10812593 (+) True G112697
TU128791 lncRNA upstream 26869 10810487 ~ 10810791 (+) True G112784
TU128806 lncRNA downstream 800 10840199 ~ 10841233 (+) True G112796
TU128807 lncRNA downstream 7334 10846733 ~ 10847395 (+) True G112797
TU128828 lncRNA downstream 26995 10866394 ~ 10872761 (+) True G112814
TU128834 lncRNA downstream 27620 10867019 ~ 10872179 (+) True G112815
TU128863 lncRNA downstream 103720 10943119 ~ 10944198 (+) True G112843
XM_036937626.1 mRNA upstream 127300 10668176 ~ 10710360 (+) False LOC110507508
XM_036937888.1 mRNA downstream 192593 11031992 ~ 11074284 (+) False washc5
XM_036937880.1 mRNA downstream 192596 11031995 ~ 11083098 (+) True washc5
XM_036937915.1 mRNA downstream 244962 11084361 ~ 11096664 (+) False nsmce2
XM_036937906.1 mRNA downstream 244976 11084375 ~ 11096664 (+) False nsmce2
XM_036937901.1 mRNA downstream 244976 11084375 ~ 11097464 (+) False nsmce2
TU128663 other upstream 11597 10811518 ~ 10826063 (+) False G112697
TU127846 other upstream 1061209 9774203 ~ 9776451 (+) True LOC118937659
TU127811 other upstream 1113789 9702040 ~ 9723871 (+) False LOC110506952
TU127568 other upstream 1393619 9440309 ~ 9444041 (+) False G111788
TU129356 other downstream 401333 11240732 ~ 11243069 (+) False fbxo32
TU129360 other downstream 422155 11261554 ~ 11273000 (+) False elovl4a
TU129361 other downstream 422155 11261554 ~ 11272897 (+) True elovl4a
TU129492 other downstream 575532 11414931 ~ 11415178 (+) True G113285
TU129561 other downstream 638577 11477976 ~ 11482741 (+) True G113313

Expression Profile