RNA id: TU129296


Basic Information

Item Value
RNA id TU129296
length 1266
lncRNA type read_through
GC content 0.38
exon number 4
gene id G113143
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11057134 ~ 11062038 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGCCTTGGGGTTAAAGATAAGTCCTTTGTGTAGAGCGTAGGCTACTCTTCTCACCTTAGCCTTGGGGTTAAAGATAAGTCCTTTGTGAAGAGCATAGGCTACTATCTCACCTTAGCCTAGGGGTTAAAGATAAGTAATTTGTGTAGAGCGTAGGCTACTATCTCACCTTAGCCTTGGGGTTAAAGATCAGTCCTTTGTGTAGAGCGTAGGCTACTATCTCACCTTAGCCTTGGGGTTAAAGATCAGTCCTTTGTGTAGAGCGTAGGCTACTATCTCACCTTAGCCTTGGGGGTAAAGATAAGTCCTTTGTGTAGAGCGTAGGCTACTATCTCACCTTAGCCTTGGGGTTAAAGATAAGTCCTTTGTGTAGAGCGTAGGCTACTATCTCACCTTAGCCTTGGGGTTAAAGATAAGTCCTTTGTGTAGAGCGTAGGCTACTCTTCTCACCAACTCCTTCCTGATACCATCTTCCAGGAGCTGCTTGGGATCCACCTTGATGATTCCAACCAGCGTCGTCTTCATCATCAGAATCCCTTCAGTGAAGATGGAGATGGCGTGGGTGAGTTTGGCAACCTCGTAGCGAGCCCCCAGCTGGGCGTAGTCCTTCAGCTTGTCCTTGTCCAGTCTGGTGGGAACCTCCATGATGGCATGAATCTGCAGCTTGATGATCTTAGCGAGGGAGGTGAACATGCTCTCAGGGATGATCTGTAACACCtagtggagagtagaggagacAACATGCTCTCAGGGATGATGTGTAACACCTAGTGGAGAGTAGAGGAAACAACATGCTCTCAGGGATGATGATCTGTAACACCtagtggagagtagaggagacAACGTGCTCTCAGGGATGATCTGTAACACCtagtggagagtagaggagacAACGTGCTCTCAGGGATGATCTGTAACACCTAGTGGAGAGTAGAGGAAACAACATGCTCTCAGGGATGATCTGTAACACCTAGTGGAGAGTAGAGGAAACAACATGCTCTCAGGGATGATCTGTAACACCTAGTGGAGAGTAGAGGAAACAACACGCTCTCAGGGATGATCTGTAACACCTAGTGGAGAGTAGAGGAAACAACATGCTCTCAGGGATGATCTGTAACACCtagtggagagtagaggagacAACGTGCTCTCAGGGATGATCTGTAACACCTAGTGGAGAGTAGAGGAAACAACGCGCTCTCAGGGATGATGATCTGTAGAGGGTTGGGTTAGGGAGTAAGGGGTCAGAGCAGGGACTGGGGGTAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129299 lncRNA downstream 1551 11054602 ~ 11055583 (-) True G113146
TU129235 lncRNA downstream 25813 11031119 ~ 11031321 (-) True G113104
TU129231 lncRNA downstream 27121 11024601 ~ 11030013 (-) False G113102
TU129233 lncRNA downstream 27700 11028543 ~ 11029434 (-) True G113102
TU129230 lncRNA downstream 31308 11024601 ~ 11025826 (-) False G113102
TU129309 lncRNA upstream 70 11062108 ~ 11063459 (-) True G113153
TU129287 lncRNA upstream 1565 11063603 ~ 11066986 (-) False G113138
TU129290 lncRNA upstream 4527 11066565 ~ 11072475 (-) False G113138
TU129289 lncRNA upstream 10791 11072829 ~ 11082755 (-) True G113138
TU129314 lncRNA upstream 34926 11096964 ~ 11097169 (-) True G113158
XM_036937860.1 mRNA downstream 56012 10840566 ~ 11001122 (-) False LOC110511734
XM_036937865.1 mRNA downstream 56012 10840566 ~ 11001122 (-) False LOC110511734
XR_005035034.1 mRNA downstream 56012 10840566 ~ 11001122 (-) True LOC110511734
XR_005035042.1 mRNA downstream 175744 10879856 ~ 10881390 (-) True LOC118937685
XM_036937853.1 mRNA downstream 231122 10811513 ~ 10826012 (-) True LOC110512108
XM_021586929.2 mRNA upstream 103075 11165113 ~ 11168638 (-) True lratd2b
XM_036937950.1 mRNA upstream 185999 11248037 ~ 11261509 (-) False prelid3a
XM_036937954.1 mRNA upstream 185999 11248037 ~ 11261509 (-) False prelid3a
XM_036938010.1 mRNA upstream 336054 11398092 ~ 11402862 (-) True LOC110514530
XM_036938038.1 mRNA upstream 409901 11471939 ~ 12290703 (-) False LOC110513475
TU129220 other downstream 35400 11021041 ~ 11021734 (-) True G113096
TU129027 other downstream 248890 10736729 ~ 10808244 (-) True eif3h
TU129012 other downstream 338476 10648265 ~ 10718658 (-) True G112965
TU128973 other downstream 486326 10570442 ~ 10570808 (-) True G112928
TU128520 other downstream 710199 10346471 ~ 10346935 (-) True G112567
TU130068 other upstream 148435 11210473 ~ 11218154 (-) True G113688
TU130103 other upstream 248805 11310843 ~ 11312658 (-) True G113712
TU130124 other upstream 261003 11323041 ~ 11325612 (-) True G113720
TU130157 other upstream 287304 11349342 ~ 11352741 (-) False G113733
TU130159 other upstream 287304 11349342 ~ 11352741 (-) True G113733

Expression Profile