RNA id: TU129350


Basic Information

Item Value
RNA id TU129350
length 2178
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G113192
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11135026 ~ 11137299 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tactgacggttacttttgattttgaccccctccctttgttcagggacacattatttcatttctgtcagtcacatgtctgtggaacttgttcagtttatgtctcagttgttgaatcttatgttcctaCAAATATTCACAAATGTTAagattgctgaaaataaatgcagttgacagtgagaggacgtttattttttttgctgagtttagctccacattgatctggtacttcctgtatatagctccacattgatctggtacttcctgtatatagctccgcattgatctggtacttcctgtatatagctccacattgatctggtacttcctgtatatagctccacattgatctggtacttcctgtatatagctccacattgatctagtacttcctgtatatagctccacattgatctagtacttcctgtatatagctccacgttgatctggtatttcctgtatatagctccacattgatctggtacttcctgtatatagctccacattgatctagtacttcctgtatatagctccacattgatctagtacttcctgtatattgctccacattgatctagtacttcctgtatatagctccacattgatctggtacttcctgtatatagctccacattgatctggtacttcctgtatattgctccacattgatctggtacttcctgtgtatagctccacattgatctggtacttcctgtgtatagctccacattgatctggtacttcctgtatatagctccacattgatctagtacttcctgtatatagctccacattgatctagtacttcctgtatattgctccacattgatctagtacttcctgtatatagctccacattgatctggtacttcctgtatatagctccacattgatctggtacttcctgtatattgctccacattgatctggtacttcctgtgtatagctccacattgatctggtacttcctgtgtattgctccacattgatctggtacttcctgtatatagctccacattgatctggtacttcctgtatattgctccacattgatctggtacttcctgtgtatagctccacattgatctggtacttcctgtatacagctccacattgatctagtacttcctgtatatagctccacattgatctggtacttcctgtatatagctccacattgatctggtacttcctgtatatagctccacattgatctggtacttcctgtatatagctccacattgatctagtacttcctgtatatagctccacattgatctggtacttcctgcatatagctccacattgatctagtacttcctgtatatagctccacattgatctagtacttcctgtatatagctccacattgatctggtacttcctgtatatagctccacattgctctggtacttcctgtatatagctccacattgatctggtacttcctgtatatagctccacattgatctagtacttcctgtatatagctccacattgatctggtacttcctgtatatagctccacattgatctggtacttcctgcatatagctccacattgatctagtacttcctgtatatagctccacattgatctagtacttcctgtatatagctccacattgatctggtacttcctgtatatagctccacattgatctagtacttcctgtatatagctccacattgatctggtacttcctgtatatagctccacattgatctagtacttcctgtatatagctccattcttgtgtattttattcctctaGTAGTATTCAGTGTATGTCTCAATCTGTAGTATTCAGTGTATGTCTCAATCTGTAGTATTCAGTGTATGTCTCAATCTGTAGTATTCAGTGTATGTCTCAATCTGTAGTATTCAGTGTATGTCTCAATCTGTAGTATTCAGTGTATGTCTCAACCTGTAGTATTCAGTGTATGTCTCAACCTGTAGTATTCAGTGTATGTCTCAATCTGTAGTATTCGGTGTATGTCTCAACCTGTAGTATTCAGTGTATGTCTCAATCTGTAGTATTCGGTGTATGTCTCAATCTGTAGTATTCAGTGTATGTCTCAATCTGTAGTATTCTGTGTATTATTCCATGTagacaaataaatgtgatttgaaggTTCAGACGGTCTTTGCAGTAGAACTAGAGGGCAACGTTGTAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129349 lncRNA upstream 134 11134506 ~ 11134892 (+) True G113191
TU129348 lncRNA upstream 2174 11132187 ~ 11132852 (+) True G113190
TU129347 lncRNA upstream 3747 11130942 ~ 11131279 (+) True G113189
TU129346 lncRNA upstream 4162 11130584 ~ 11130864 (+) True G113188
TU129280 lncRNA upstream 17807 11116177 ~ 11117219 (+) True G113134
TU129371 lncRNA downstream 20144 11157443 ~ 11157667 (+) True G113202
TU129373 lncRNA downstream 21397 11158696 ~ 11160952 (+) False G113204
TU129374 lncRNA downstream 21397 11158696 ~ 11160952 (+) True G113204
TU129380 lncRNA downstream 27888 11165187 ~ 11166859 (+) True G113205
TU129386 lncRNA downstream 33606 11170905 ~ 11171113 (+) True G113207
XM_036937901.1 mRNA upstream 37562 11084375 ~ 11097464 (+) False nsmce2
XM_036937915.1 mRNA upstream 38362 11084361 ~ 11096664 (+) False nsmce2
XM_036937906.1 mRNA upstream 38362 11084375 ~ 11096664 (+) False nsmce2
XM_036937910.1 mRNA upstream 38362 11084383 ~ 11096664 (+) True nsmce2
XM_036937880.1 mRNA upstream 51928 11031995 ~ 11083098 (+) True washc5
XM_036937927.1 mRNA downstream 65588 11202887 ~ 11211212 (+) True LOC110512016
NM_001193326.1 mRNA downstream 90198 11227497 ~ 11243074 (+) False fbxo32
XM_036937937.1 mRNA downstream 123613 11260912 ~ 11275480 (+) False elovl4a
XM_036937943.1 mRNA downstream 124255 11261554 ~ 11275480 (+) False elovl4a
XM_036937931.1 mRNA downstream 124257 11261556 ~ 11275480 (+) False elovl4a
TU128663 other upstream 308963 10811518 ~ 10826063 (+) False G112697
TU127846 other upstream 1358575 9774203 ~ 9776451 (+) True LOC118937659
TU127811 other upstream 1411155 9702040 ~ 9723871 (+) False LOC110506952
TU127568 other upstream 1690985 9440309 ~ 9444041 (+) False G111788
TU129356 other downstream 103433 11240732 ~ 11243069 (+) False fbxo32
TU129360 other downstream 124255 11261554 ~ 11273000 (+) False elovl4a
TU129361 other downstream 124255 11261554 ~ 11272897 (+) True elovl4a
TU129492 other downstream 277632 11414931 ~ 11415178 (+) True G113285
TU129561 other downstream 340677 11477976 ~ 11482741 (+) True G113313

Expression Profile