RNA id: TCONS_00028121


Basic Information

Item Value
RNA id TCONS_00028121
length 4118
lncRNA type lincRNA
GC content 0.36
exon number 3
gene id XLOC_014109
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 28788968 ~ 28824390 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGATGGAGAGAAATGGAGGAGGCTGTAAGGGGAGGGGGAGACAGagttgtctctctctccctctctcgctcTTTTCTCCACCGCTTTATTTCGTTCATGTTCACAGCGCTGATCTTCACCGTTGCTGCAGAGCGAAACGTAGAGTCGTGTCCCACTCAACCTCCCCCGTTTGCACTTTTGGGTACAGtaAACGGTGGGATAAAAGACGGGCTGAAGTGAGTTGGTCAGACGGGCCTTGCCAAACCCACAGGCTGTTTCTGCCGCTCTGCTACCGCTGCGCTGTTTTTGATGTGAGCCACAGTGCAGATGCAGTGTTTTTTGGGCGATCACCAATAAGCTACCGTACTGGAGGAGATGCTGGTAAAGTACGGGAGACCTTTCAAGaAAGCGAATGCTGGTCTGGTGTGCCAATATTCGTGAGGGATGTTTGGAGGTTGAATGGGAAACCCAGTTTTTCTGTCATTGGAGAGTATGTGAATgcctaaatgtaaacatttatgtTGTTGGGGAACTTTCTGGAAACTTTTGTAATTTGTTGCTCCCCAAAGTGTGGGATGTTATTTAAAGACTCGATATACTTCAAACAAAATCAAAGAATGAATTGAAATGACGTCATTTTGAATAAAATCTGTGTGAATAGCCAATATTTTTGAGTTCTTTTCAGCAGTTTGAAACAGCTCATCAAAGTACATTTTAAGGAGAATTAATTTTggcttttaaacacattttagctACCATTGGTCTGTGGTGATTATGCATTCAGTGGGCTTGTTCTTGATCTCTGCCTTCTTAAACATGCGATATCTTCCCCGGGATTTGTTACTTATTCCACGGGGGTCGGAAAGGAGACCAACATCTAAAATAACAACACAAGCTACAGTACATAAATACACTGGAGAGTCGAGTAGCAGAActggtacagatgtatccgcaccaGTATGTCTGCTCACAGAGGGATGCCCACCTTGCCACGTCACATCTTTTTTATGAGTTTGTGCACACCAGCTTTACATTTAGTGTCTGTTCGCAACTAGTAGAAAAGAATGTAAAGATATGATGTGCCAGATATTTATGAAACTGTTCCATTGTTGTGAGTACACATaagcagcacatttaaaaacccTGCCTACTGCAGCGGGAGCGTGTTGGAGTGtaaaaatatacacttttttttttattacactaaAACTATAACTCATGAGATAGCCATTttgatatttttgtaatttaaaggtcccgtgaaattaaaattaagttttttagatgttagtttcagtttgTTAATTTTAAAGGATATCTATGAGCTAGCGTGtcccaaaacagtgacaaaattcgtgtttagaacatataaacatccaaagtttgtagtttgtcacttccgcctgaATCGTCAAGGAttttttcacatcacctcatacttcagtttttcatcaaatctggccaatcaaatgctctgtagCATCGGTCATGCCtacccccttcaagacgcttctcatttgattTAATGCACTTTCTGGGAGAGCtgtcataaaaacaaaatgatattttttttggCGCTTTTTTCTTGAAAGAGGAGAAGCTACTTTTTGCCCATTCTTCATTTTTCAGTTGTAATTACATCAAACacagaataaaaatgcacatttcaaagcactttacgggacttttaataactttaaatgaaattttatttatttaattacagtacCCCGactgtgtgtatatttattttatacatagtTATTTTGATAAAGTTTTAAAACGCAAAAAAGTTCTGAGTATTTCTACCTTCAATGGCAATGACAGTCACATTGACCGCATGCATTTCAGCATCTGCTACTTTTACCATTGTATGTGTgcttctgttgcctagcaactttctgctaacaaaaatattactttctgatagcaaaaacaaaactttacttTAGACATGTCttgcaaacattttaaaacaacgttTTCACCGGAGTGAAAAATCTTTGCTTTCCTGCTTGCCAGACAATGTAAGGTACACACCTTCAGGGGGGTCAAGCAACTTGTGCACAGTTTTAGATAGGTATATTGACCATACAATATGATGACAGATATTCAAAGCTTAGTTCTAAGATTTCAATAGAAGCTTCaaatgtaaattacaaaaaaaaagaaaaataataataataaataaataaataaaaaataaaataataataaataaataaataaatttggtaCAGTCTTTTATGAATGGTCATGTATACTGCATATATATGAATTGTATATGACTGGTATGAATGGTAATTCCAGTGTTTAAGCGGATAAAATACTGACAGTATACTAGTAGATTGCAAAAAGTAGATCACTATTGAATGACACAAAAATTAAAActcattatttattctttttgttcAAACCCCTATTTAACTGACTTGTTATCAATTATATGGATTACATTTCAGAATAACATTTTATAGAAGGATAAAAGACATTAATCAATGAtgtaatttatcatttttaattatcGATTTGTGTGGGTGTGACAAATGATCCACTACCAGCcgcatttatttgatcataatACATCACTAAGCAGTGGTGTTGTGAAATgtagttacactgtaaaataatgttttatatttgaatatatgttagaaattattaattattaaatgactAATTTATCAATAATATTGAATTTCCAGCATTATTAATCAATTTTAAATGATCTTTGATGAGACATTATGCTATTATGCTGATTTGAGGctgaaaaaaaatcctaaaatcaTCAACGCTAAATGATTATTTCACCCAAAACCCAACAAataatttactcacacttcacgttttacaaatttctttcttctgttaaacaatagaggacattttaaaaatagaattttGATGTCAGAAACTGGTTACCATTGGCttccttagtatttgtttttcctatggatGTCAATTGGTTACCAGTTTATAAGATTCTTCAAATATCTTTtgtgtgtgttaaacagaagaaaatgttttgaaaccaCTTGAAGATGAGAAAATAGTCAGTcaaatttcatttgttttgttaaactctctttttaaaaacagtatatatatattcatatttttttatgtggaAACTGTGGCAGTGTATATCTGTTGTATATCTGTGTATATCTGTTGTTTTTGAATTTTTACATATCAACCTCAATCCATTTACTGAACACAGTAAAACACTTTGTGAAGTACTTCAACAAAATCTGTGTGAAAGTATCTATTATAACTGCAGAATATCTAAATGCAATATCCTGAGCCTTCCTTTGCAGTATTTCTCTTCAACACCAGGTCCCTCTTTTGCACACATATAACCCTACGTGTCACTTCCAGCCAAAGCATTTTAAAGACGTTGTACAATTTTCAATAATGTTCCGCCAGTCCTAAAGGAGCTCAATAACTCTAGGCCCACAGAGGCCACTGAATCagcatttcaaagtgaaaactcCTTTTCCACAAAGACCTTTGaattgaaatagaaaaaaaaaaagtttctcctTTCCAGCCGCACAAACTCAACTCTGATTGACCCTTCTCAATCTGTGCGCCTCTCTGTTGTAAAGAAACAGGCATAAAATAAGGCAGAGTTAATAGAGTTTAGGACTAAGAGCCAAACCGCACTGGAATAGGATGGAGATGGAAAGAGTCGAGGGAGGGAAAGAAGGAAAGATTGAGATCCCTCAGGGAGAGGGATTGGGTCCGGGACGCCTGAGGAGATACTCGCCTCTAATTGGCCGAATGCCTCCGGTCGGTTGTTCCCATAATGCCGTGTGTTGGAGTGACTTTCTGGAAAGTCTCACTGGACTCCTCAAGGTTACCGTCACTCTTCAGTGTTATCGCTGCACTCTGAGCCACTGTAGCAAATCTGCTTTTAGCCGAGCGCCGATGAACTACTGAGAATATGAATATTCAAAAAGTGGAACGGGTGCTTGTACAACTCCAACACAAGCAGGTTTTCATTAGTTCAAGGTCTCAAATGCTGCTGGTTGAAAGGTTGAAGGAATTATTTCTAAAtctctttaaaatacatttgttatgCTAACCAAAGCTGCAGTTATTAAatcataaatacattaaaaacggTAATgttctga

Function

GO:

id name namespace
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0003008 system process biological_process
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000194341

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029928 lncRNA upstream 2842 28795024 ~ 28800587 (+) False XLOC_014109
TCONS_00029919 lncRNA upstream 607987 28115805 ~ 28195442 (+) False XLOC_014105
TCONS_00029918 lncRNA upstream 615746 28114514 ~ 28187683 (+) False XLOC_014105
TCONS_00029722 lncRNA downstream 281621 29105935 ~ 29107694 (+) True XLOC_014110
TCONS_00029944 lncRNA downstream 634803 29459117 ~ 29489898 (+) False XLOC_014114
TCONS_00029946 lncRNA downstream 634803 29459117 ~ 29586042 (+) False XLOC_014114
TCONS_00029945 lncRNA downstream 634803 29459117 ~ 29586042 (+) False XLOC_014114
TCONS_00029947 lncRNA downstream 634803 29459117 ~ 29586739 (+) False XLOC_014114
TCONS_00028116 mRNA upstream 469274 28291440 ~ 28334155 (+) False XLOC_014108
TCONS_00028113 mRNA upstream 469589 28291062 ~ 28333840 (+) False XLOC_014108
TCONS_00028115 mRNA upstream 483290 28291376 ~ 28320139 (+) False XLOC_014108
TCONS_00028112 mRNA upstream 513216 28284120 ~ 28290213 (+) True XLOC_014107
TCONS_00028111 mRNA upstream 541453 28256076 ~ 28261976 (+) True XLOC_014105
TCONS_00028124 mRNA downstream 479533 29303847 ~ 29333867 (+) True XLOC_014112
TCONS_00028125 mRNA downstream 513475 29337789 ~ 29363779 (+) True XLOC_014113
TCONS_00028126 mRNA downstream 973750 29798064 ~ 29800205 (+) False XLOC_014116
TCONS_00028127 mRNA downstream 973792 29798106 ~ 29800812 (+) True XLOC_014116
TCONS_00028128 mRNA downstream 984157 29808471 ~ 29821601 (+) False XLOC_014117
TCONS_00028118 other upstream 469265 28331227 ~ 28334164 (+) True XLOC_014108
TCONS_00028117 other upstream 472332 28321679 ~ 28331097 (+) False XLOC_014108
TCONS_00028114 other upstream 487476 28291376 ~ 28315953 (+) False XLOC_014108
TCONS_00028109 other upstream 660175 28143135 ~ 28143254 (+) True XLOC_014106
TCONS_00028091 other upstream 1871996 26928624 ~ 26931433 (+) True XLOC_014095
TCONS_00028122 other downstream 378828 29203142 ~ 29203257 (+) True XLOC_014111
TCONS_00028123 other downstream 479533 29303847 ~ 29320883 (+) False XLOC_014112
TCONS_00028134 other downstream 1029935 29854249 ~ 29860206 (+) False XLOC_014118
TCONS_00028136 other downstream 1034722 29859036 ~ 29860334 (+) True XLOC_014118
TCONS_00028142 other downstream 1694141 30518455 ~ 30518573 (+) True XLOC_014123

Expression Profile

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