RNA id: TU129362


Basic Information

Item Value
RNA id TU129362
length 2899
lncRNA type read_through
GC content 0.43
exon number 2
gene id G113197
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11273121 ~ 11300282 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTAGGGCTGAAGGAGGCTGGCACTAACAAGCCTTGCTGTTTGATCTTATTATACCTCCcacatagcaccctattccctatacagcacATGACTTGTAGGTGAAGGTGTGGTAAGAGGCAAGGCtggagtcaattccatttcaattcagtcaatctGTGACATTCAAAATTTACAATTTTCCTCATGGGCTTTGATTGGGGAAAATTTGAATTTCAGTTAACTTTCTGCGTTTGGCTGAATTGAAAGGGAAATAACCCCAACCCTGGCAAGAGGTCGCGACGTGTCCAAGGTGACCGTCATTACAACTAATCCAACTTTCAGTAGTTTCTGGTCTGGAAAACAATAACAtcaacatgttctctctctgtactgcagTGTTGAGGTTTGTAGCTAGCTAACCGACTGGGGTATAGCTAGCTAACCCACTGGTTTGTAGCTAGCTAACCCACTGGTTTGTAGCTAGCTGACCGACTGGTTTGTAGCTAGCTGACCGACTGGTTTGTAGCTAGCTGACCGACTGgcttgtagctagctaactcacTGGTTTGTAGCTAGCTGATTTAATGGTGTTTAGTTAGCTGATTCACTGGTGTTTAGCTAACTAACCCACTggtttgtagctagctaactcgtTGATTCACTAGTTTGTAGCTAGCTGATTCATTGGTGTGTAGCTAGCCGATTCCCTGGTTTGTAGCTAGCTAACCCATTGGTTTGTAGCTAGCTAACCCACTGGTTTGTAGCTAGCTAACCCACTGGTTTGTAGCTAGCTAACCCACTGGTTTGTAGCTAGCTGATTCACTGGGGTGTAGCTAGCTAACCCACTGGTGTGTAGCTAGCTAACCCACTGGTTTGTAGCTAGCTAACCCACTGGTTTGTAGCTAGCTAACCCACTGGTTTGTAGCTAGCTAACCCACTGGTTTGTAGCTAGCTGATTCACTGGGGTGTAGCTAGCTAACCCACTGGTTTGTAGCTAGCTAACCCACTGGTTTGTAGCTAGCTGATTCACTGGGGTGTAGCTAGCTAACCCACTGGTTTGTAGTTAGCTAACCCACTGGTTTGTAGCTAGCTGATTCACTGGTGTGTAGTTAGCTAACCCACTGGTTTGTAGCTAGCTGATTCACTGGTGTGTAGTTAGCTAACCCACTGGTTTGTAGCTAGCTAACCCACTGGTTTGTAGCTAGCTGATTCACTGGTGTGTAGCTAGCTAACCCACTGGTAACAGTTACACTGCTATCTAGAGACaggaacacaccacacacacacacatagtttaAACATTCATTGTGTACGTATGCCTTTTAAAGAATATGACTTACTCATACTGTCATTTTTGTCCTTTGTCCAGATTTGTTGATTCATATTATGTGAGGTAGGCCATTGAATTCTTCAGCCCACCCACACTGTTGCcataagcagagagagagagatagagatcggTCAGTTTACATGCCCCATACATGATGTAATTGTTCATTTTTCTCAATAAGACAGACTCAGCTGTTGGCAATCCTAGCCACATGTTGAGattgcattaaaaaaaaatggagCTCTTGAAATGCAAGCTAAGCTTTATCCAATTACAACTTGGCCAGTTAGACTTGTTTACTTACTGTACATGCTAATAAAAAGCATCACTCATTATTATTAGAAGTGACATTCAGTTAGAGACAGTGGAATCTAGAAGTGACATTCGGTTAGAGACAGCGGAATCTAGAAGTGACATTCGGTTAGAGACAGTGGAATCTAGAAGTGACATTCGGTTAGAGACCGTGGAATCTAGAAGTGACATTCGGTTAGAGACCGTGGAATCTAGAAGTGACATTCGGTTTGAGACAGTGGAATCTAGAAGTGACATTCGGTTTGAGACATTGGAATCTAGAAGTGACATTCAGTTAGAGACAGTGGAATCTAGAAGTGACATTCAGTTAGAGACAGTGGAATCTAGAAGTGACATTCAGTTATAGACAGTGGAATCTAGAAGTGACATTCAGTTAGAGACAGTGGAATCTAGAAGTGACATTCGGTTAGAGACCGTGGAATCTAGAAGTGACATTCGGTTTGAGACATTGGAATCTAGAAGAGACATTCAGTTAGAGACAGTGGAATCTAGAAGCTACATTTGGTTAGAGACAGTGGAATTTCGTCCGAaatgttttcttgttttttttatttcactgttCTGTCCTGGCTGCCTCCACATACAATATCACTAGTTGTCTTACTCAGTGAACGTGGAGCTGTTGAGCAGAGCCAAGTAGACATACAGTAACTGTGAAGACGCTGCTATGGAATTTCAGGGCAATTTCAGGGCAAATCAACCAACTAGTCAACTGGGAGACGCTGTTTTATCAACCAATCAAATCGAATGATCGATTGCTGGATTGATTTGATACGCTGTTTAGGCAATATCAGCTGGTCAATGTGTTTAgttagtgtactgtatatatatactgctacTGAAGGACCGTGTGCTCTACCTAACCGTGACACGTGTAGAGTACAACGCGACGCAGTCTACTCTAAGAGCAGCAAATTCAACCATGGTATCACGTCATGTAATAATAAcgttatttcttgttttttttatagaTTTGTATTGTTCCTGTCTTAAATATAAATAGTTGTTTTCTTCTCCTTCTGAATGGCAAAGTGCTTGTCTGTGTTTCAGTGTTCTTGAagacttttttttatttgtatattaTTGGCGTGTTGTATATATTAAACGCTGTGtgattttgtacattttgtgcttttgggggggggggggggggggcggaaaAGTTCCCAACTGAATGCCACGATGAGGCAGATATTTCTCTTGCACGTTCTTTTCAAAATGATCATGACTTATTTCAAAACTCACAGATACAAAATAAACAGAATgcctgtacata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129426 lncRNA upstream 13062 11259739 ~ 11260059 (+) True G113241
TU129423 lncRNA upstream 18617 11253868 ~ 11254504 (+) True G113238
TU129369 lncRNA upstream 25765 11245613 ~ 11247356 (+) True G113200
TU129367 lncRNA upstream 27559 11243710 ~ 11245562 (+) True G113199
TU129359 lncRNA upstream 30052 11242592 ~ 11243069 (+) True fbxo32
TU129448 lncRNA downstream 26101 11304280 ~ 11305549 (+) True G113256
TU129450 lncRNA downstream 32981 11311160 ~ 11312084 (+) True G113258
TU129459 lncRNA downstream 58335 11336514 ~ 11337268 (+) False G113265
TU129461 lncRNA downstream 58335 11336514 ~ 11337268 (+) False G113265
TU129463 lncRNA downstream 58335 11336514 ~ 11337268 (+) True G113265
NM_001193326.1 mRNA upstream 30047 11227497 ~ 11243074 (+) False fbxo32
XM_036937927.1 mRNA upstream 61909 11202887 ~ 11211212 (+) True LOC110512016
XM_036937901.1 mRNA upstream 175657 11084375 ~ 11097464 (+) False nsmce2
XM_036937906.1 mRNA upstream 176457 11084375 ~ 11096664 (+) False nsmce2
XM_036937977.1 mRNA downstream 28995 11307174 ~ 11324804 (+) False LOC110520740
XM_036937987.1 mRNA downstream 29741 11307920 ~ 11324807 (+) False LOC110520740
XM_036937979.1 mRNA downstream 29752 11307931 ~ 11324804 (+) True LOC110520740
XM_036937965.1 mRNA downstream 49847 11328026 ~ 11373000 (+) False soga3a
XM_036937970.1 mRNA downstream 49847 11328026 ~ 11373000 (+) False soga3a
TU129360 other upstream 121 11261554 ~ 11273000 (+) False elovl4a
TU129361 other upstream 224 11261554 ~ 11272897 (+) True elovl4a
TU129356 other upstream 30052 11240732 ~ 11243069 (+) False fbxo32
TU128663 other upstream 447058 10811518 ~ 10826063 (+) False G112697
TU127846 other upstream 1496670 9774203 ~ 9776451 (+) True LOC118937659
TU129492 other downstream 136752 11414931 ~ 11415178 (+) True G113285
TU129561 other downstream 199797 11477976 ~ 11482741 (+) True G113313
TU129672 other downstream 430424 11708603 ~ 11709777 (+) True G113396
TU131040 other downstream 1442229 12720408 ~ 12720693 (+) True G114243
TU131041 other downstream 1442551 12720730 ~ 12721315 (+) True G114244

Expression Profile