RNA id: TU130124


Basic Information

Item Value
RNA id TU130124
length 1894
RNA type TUCP
GC content 0.35
exon number 4
gene id G113720
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11323041 ~ 11325612 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATATGGTGTCTCAGCCCCAGAGGTgtgtggtctcctccagtgtctcAGCCCCAGAGGTgtgtggtctcctccagtgtctcAGCCCCAGAGGTgtgtggtctcctccagtgtctcAGCCCCAGAGGTgtgtggtctcctccagtgtctcAGCCCCAGAGGTgtgtggtctcctccagtgtctcAGCCCCAGAGGTgtgtggtctcctccagtgtctcAGCCCCAGAGGTGTGTGGTCTTCTCCAGTGTCTCAGCCCCAGAGGTgtgtggtctcctccagtgtctcAGCCCCAGAGGTgtgtggtctcctccagtgtgtgTTGAAAGCTTGTAAATAGTAACTGCTGAAACGTGGAATAGTGTCCCGTATCACTTGTGACCTTAGATGGGAATAttccaaaataaaaataaaataaataaataaaaaatatgactaAACAAAAATATGTGTCTATGTCAAAGTGAGACGGACGTTACAGGACGAAGAAGAGAGTGAAGAGGAAGACGAGTTTGAAGATGGTGGCGTAGGAGAGTGAAGAGAACAGGACGAGGATGAGGATGAGCAGAATGATGGGCTGAAACATCTAGGTGGGATTAATAAGGACGGTCGAAGGAGGACGAGTCAGGAAAACAGAATGGTagaaagacaggaagagagaacaGATTAAAAGCAGGTTAAACAATACTGACATTCAGACCAAATAGAGGCCTATCCCACAGTAGATGTAATACTGACATTCAGACCAAATAGAGGCCTGTCCCACAGTAGATGTAATACTGACATTCAGACCAAATAGAGGCCTGTCCCACAGTAGATGTAATACTGACATTCAGACCAAATAGAGGCCTGTCCCACAGTAGATGTAATACTGACATTCAGACCAAATAGAGGCCTGTCCCACAGTAGATGTAATACTGACATTCAGACCAAATAGAGGCCTGTCCCACAGTAGATGTAATACTGACATTCAGACCAAATAGAGGCCTGTCCTACAGTAGATGTAATACTGACATTCAGACCAAATAGAGGCCTGTCCTACAGGAGATGTAATACTGACATTCAGACCAAATAGAGGCCTGTCCTACAGTAGATGTAATACTGACATTCAGACCAAATAGAGGCCTGTCCAACAGTAGATGTAATACTGACATTCAGACCAAATAGAGGCCTGTCCTACAGTAGATGTAATACTGACATTCAGACCAAATAGAGGCCTGTCCTACAGGAGATGTAATACTGACATTCAGACCAAATAGAGGCCTGTCCTACAGTAGATACTGACATTCAGACCAAATAGAGGCCTGTCCAACAGTAGATGTAATACTGACATTCAGACCAAATAGAGGCCTGTCCTACAGCAGATGTAATACTGACATTCAGACCAAATAGAGGCCTGTCCTACAGTAGATGTAATACTGACATTCAGACCAAATAGAGGCCTGTCCTACAGTAGATACTGACATTCAGACCAAATAGAGGCCTGTCCTACAGTAGATGTAATACTGACATTCAGACCAAATAGAGGCCTGTCCTACAGTAGATGTAATACTGACATTCAGACCAAATAGAGGCCTGTCCTACAGTAGATGTAATACTAACATTCAGACCAAATAGAGGCCTGTCCAACAGTAGATGTAATACTGACATTCAGACCAAATAGAGGCCTGTCCTACAGTAGATGTAATACTGACATTCAGACCAAATAGAGGCCTGTCCCACAGTAGATGTAATACTGACATTCACACCAAATAGAGGCCTGTCCTACAGTAGATGTAATACTGACATTCAGACCAAATAGAGGCCTGTCCCACAGTAGATGTAATACTGACATTCAGACCAAATAGAGGCCTGTCCTACAGTAGATGTAATACTGACATTCAGACCAAATAGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130108 lncRNA downstream 4474 11317865 ~ 11318567 (-) True G113716
TU130092 lncRNA downstream 36893 11279305 ~ 11286148 (-) True G113701
TU130088 lncRNA downstream 44867 11269455 ~ 11278174 (-) False G113698
TU130089 lncRNA downstream 46467 11272763 ~ 11276574 (-) True G113698
TU130018 lncRNA downstream 61248 11196145 ~ 11261793 (-) True prelid3a
TU130128 lncRNA upstream 118 11325730 ~ 11326367 (-) True G113721
TU130134 lncRNA upstream 10358 11335970 ~ 11337267 (-) False G113725
TU130132 lncRNA upstream 10893 11336505 ~ 11337267 (-) True G113725
TU130138 lncRNA upstream 12984 11338596 ~ 11339113 (-) True G113727
TU130141 lncRNA upstream 20000 11345612 ~ 11346342 (-) True G113730
XM_036937950.1 mRNA downstream 61532 11248037 ~ 11261509 (-) False prelid3a
XM_036937954.1 mRNA downstream 61532 11248037 ~ 11261509 (-) False prelid3a
XM_021586929.2 mRNA downstream 154403 11165113 ~ 11168638 (-) True lratd2b
XR_005035048.1 mRNA downstream 263568 11058984 ~ 11059473 (-) False LOC118937688
XR_005035042.1 mRNA downstream 441651 10879856 ~ 10881390 (-) True LOC118937685
XM_036938010.1 mRNA upstream 72480 11398092 ~ 11402862 (-) True LOC110514530
XM_036938038.1 mRNA upstream 146327 11471939 ~ 12290703 (-) False LOC110513475
XM_036938043.1 mRNA upstream 146327 11471939 ~ 12290706 (-) False LOC110513475
XM_036938036.1 mRNA upstream 146327 11471939 ~ 12290710 (-) False LOC110513475
XM_036938048.1 mRNA upstream 146327 11471939 ~ 12290710 (-) False LOC110513475
TU130103 other downstream 10383 11310843 ~ 11312658 (-) True G113712
TU130068 other downstream 104887 11210473 ~ 11218154 (-) True G113688
TU129220 other downstream 301307 11021041 ~ 11021734 (-) True G113096
TU129027 other downstream 514797 10736729 ~ 10808244 (-) True eif3h
TU129012 other downstream 604383 10648265 ~ 10718658 (-) True G112965
TU130157 other upstream 23730 11349342 ~ 11352741 (-) False G113733
TU130159 other upstream 23730 11349342 ~ 11352741 (-) True G113733
TU130213 other upstream 300923 11626535 ~ 11658668 (-) True LOC110513475
TU131242 other upstream 1258415 12584027 ~ 12585140 (-) True G114390
TU131258 other upstream 1285057 12610669 ~ 12613680 (-) True G114402

Expression Profile