RNA id: TU129479


Basic Information

Item Value
RNA id TU129479
length 402
lncRNA type intronic
GC content 0.50
exon number 2
gene id G113276
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11361312 ~ 11368100 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctacattgctgcctgctatatgatgagggagctgtgggttggcagaccactacattgctgcctgctatatgatgagagagatgagagagctgtgggttggcagaccactacattactgcctgctatatgatgagggagctgtgggttggcagaccactacattgctgcctgctatatgatgagggagatgagggagctgtgggttggcagaccactacattactgcctggtatatgatgagagagctgtgggttggcagaccactacattactgcctgctatatgatgagggagatgagagagctgtgggttggcagaccactacattactgcctgctatatgatgagggagatgagagagctgtgggttggcagaccactacattgctgcctgctatatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129459 lncRNA upstream 24044 11336514 ~ 11337268 (+) False G113265
TU129461 lncRNA upstream 24044 11336514 ~ 11337268 (+) False G113265
TU129463 lncRNA upstream 24044 11336514 ~ 11337268 (+) True G113265
TU129450 lncRNA upstream 49228 11311160 ~ 11312084 (+) True G113258
TU129448 lncRNA upstream 55763 11304280 ~ 11305549 (+) True G113256
TU129443 lncRNA downstream 3541 11371641 ~ 11372997 (+) False soga3a
TU129444 lncRNA downstream 3541 11371641 ~ 11372997 (+) True soga3a
TU129481 lncRNA downstream 7850 11375950 ~ 11376160 (+) True G113278
TU129482 lncRNA downstream 11035 11379135 ~ 11379439 (+) True G113279
TU129486 lncRNA downstream 15998 11384098 ~ 11384386 (+) True G113281
XM_036937987.1 mRNA upstream 36505 11307920 ~ 11324807 (+) False LOC110520740
XM_036937977.1 mRNA upstream 36508 11307174 ~ 11324804 (+) False LOC110520740
XM_036937979.1 mRNA upstream 36508 11307931 ~ 11324804 (+) True LOC110520740
XM_036961612.1 mRNA upstream 83755 11274681 ~ 11277557 (+) True LOC118944054
XM_036937943.1 mRNA upstream 85832 11261554 ~ 11275480 (+) False elovl4a
XM_036938002.1 mRNA downstream 24842 11392942 ~ 11397308 (+) True echdc1
XM_036937994.1 mRNA downstream 34843 11402943 ~ 11413713 (+) True fbxo43
XM_036938029.1 mRNA downstream 48106 11416206 ~ 11451916 (+) False LOC110510416
XM_036938016.1 mRNA downstream 48106 11416206 ~ 11458431 (+) False LOC110510416
XM_036938019.1 mRNA downstream 48106 11416206 ~ 11458431 (+) False LOC110510416
TU129360 other upstream 88312 11261554 ~ 11273000 (+) False elovl4a
TU129361 other upstream 88415 11261554 ~ 11272897 (+) True elovl4a
TU129356 other upstream 118243 11240732 ~ 11243069 (+) False fbxo32
TU128663 other upstream 535249 10811518 ~ 10826063 (+) False G112697
TU127846 other upstream 1584861 9774203 ~ 9776451 (+) True LOC118937659
TU129492 other downstream 46831 11414931 ~ 11415178 (+) True G113285
TU129561 other downstream 109876 11477976 ~ 11482741 (+) True G113313
TU129672 other downstream 340503 11708603 ~ 11709777 (+) True G113396
TU131040 other downstream 1352308 12720408 ~ 12720693 (+) True G114243
TU131041 other downstream 1352630 12720730 ~ 12721315 (+) True G114244

Expression Profile