RNA id: TU130179


Basic Information

Item Value
RNA id TU130179
length 1369
lncRNA type antisense_over
GC content 0.40
exon number 3
gene id G113741
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11371263 ~ 11373006 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGAAGTAGACGGTAAATATGTAGCTACATTTATTACACAAATTAAAAACAGCAAAGGCATCACGTTCATGATATAGACACGAGGTCACGAGGTCACGAGGTCACCACCACATCGACTCAACAGACTGTAGTCAATAGGGCCGGGTAGGTAACCATCGGTTACAGAGACCACGAGGTCACGAGGTCACCACCACATCGACTCAACAGACTGTAGTCAATAGGGCCGGGTAGGTAACCATCGGTTACAGAGACCACGAGGTCACGACCACGTCGATTCAACAGACTGTGGTATTAGTCAATAGGGCCGGGTAGGTAACCATCGGTTACAGAGACCACCAGTAGAAAGGGTTTGTTGTCCATTTCATCAAGttaaaaataaaatttaaaaatatatttaaaaaaaaggggTCATTCTGCTATTAGtaaagtgttttttttgtatgaactgcagattgcccctttaagcatGGCCCCCCCCAACAAACAGGAAGCGCTAACACACAAGGAGCTAGTCGGCTATCCTGCCCGACAACAGCCGGCGATGTCCAATCAAATAAAAGCATAGAAACTCATcagtccttttttttttttatagagagAAGAGAAGCTGTAGACGACACCTTTGGTAAATATGAAGAAACAGGCCCGTTTTATGTAATCCATCTGATATCAGAAAGGTAAAGAATAACGAACATTTATTCTGTAATACTGTAATTATTATGCAACATGTCAAGTTAAAGAGAGTATGTGAAATGAAAGGCGTTGAATATATTAgcctcctaaatggcaccctattccctatttagtgcactacttttgaccaaaaagCCCCCTATGgcactatgggctctggtctaaaatagtgcgcactatatagggaatagggtgccatttgggatgcacattaAGCCACAGAGGTACAGTCAGCATTGGGGATCCTGGAGTTGCTATAGTAGAATACATGAAACGTCTCCTCCGCTAGTCGATGAGATTACATTCTGAAGATGATCGGTGAACCAACTCCACGTTGGTCCACAGCTGAAGCTCTTGGATCGTCTGATTGGTTGTAGAAGTAACAGTCTCGGTACGTATAGAGGCGGTGGAGGAAAAGGCATCTTATTGGTTCAGACACAGGGTCAGCTGGGGGTCAGATGATGACTGTCTCCGTGTGATAGGCTGAGTAGGagaatgaggtgtgtttgtggGCGGAGCCGGAAGAGGGCTGGTttataggggtggaggaggaggaggaggaggaagaggtggagggggaACAACTAGCCCAGCGTGACGGGGGGCGGCGGTTGGCTGGACAGGCCGGACGAGAGAAATTCTTCTGGACTGAAGAGGAGCTGGAAGATACTTTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130170 lncRNA downstream 2268 11366813 ~ 11368995 (-) True G113737
TU130162 lncRNA downstream 14717 11355573 ~ 11356546 (-) True G113734
TU130142 lncRNA downstream 23657 11346565 ~ 11347606 (-) False G113731
TU130143 lncRNA downstream 23657 11346611 ~ 11347606 (-) True G113731
TU130141 lncRNA downstream 24921 11345612 ~ 11346342 (-) True G113730
TU130185 lncRNA upstream 359 11373365 ~ 11373605 (-) True G113742
TU130186 lncRNA upstream 1546 11374552 ~ 11374779 (-) True G113743
TU130189 lncRNA upstream 9171 11382177 ~ 11383434 (-) True G113744
TU130197 lncRNA upstream 20462 11393468 ~ 11393896 (-) True G113745
TU130204 lncRNA upstream 25592 11398598 ~ 11400014 (-) True G113749
XM_036937950.1 mRNA downstream 109754 11248037 ~ 11261509 (-) False prelid3a
XM_036937954.1 mRNA downstream 109754 11248037 ~ 11261509 (-) False prelid3a
XM_021586929.2 mRNA downstream 202625 11165113 ~ 11168638 (-) True lratd2b
XR_005035048.1 mRNA downstream 311790 11058984 ~ 11059473 (-) False LOC118937688
XR_005035042.1 mRNA downstream 489873 10879856 ~ 10881390 (-) True LOC118937685
XM_036938010.1 mRNA upstream 25086 11398092 ~ 11402862 (-) True LOC110514530
XM_036938038.1 mRNA upstream 98933 11471939 ~ 12290703 (-) False LOC110513475
XM_036938043.1 mRNA upstream 98933 11471939 ~ 12290706 (-) False LOC110513475
XM_036938036.1 mRNA upstream 98933 11471939 ~ 12290710 (-) False LOC110513475
XM_036938048.1 mRNA upstream 98933 11471939 ~ 12290710 (-) False LOC110513475
TU130157 other downstream 18522 11349342 ~ 11352741 (-) False G113733
TU130159 other downstream 18522 11349342 ~ 11352741 (-) True G113733
TU130124 other downstream 45651 11323041 ~ 11325612 (-) True G113720
TU130103 other downstream 58605 11310843 ~ 11312658 (-) True G113712
TU130068 other downstream 153109 11210473 ~ 11218154 (-) True G113688
TU130213 other upstream 253529 11626535 ~ 11658668 (-) True LOC110513475
TU131242 other upstream 1211021 12584027 ~ 12585140 (-) True G114390
TU131258 other upstream 1237663 12610669 ~ 12613680 (-) True G114402
TU131298 other upstream 1334821 12707827 ~ 12709315 (-) True G114424
TU131319 other upstream 1362308 12735314 ~ 12739157 (-) True G114442

Expression Profile